DMR 41041 chr16:49674501-49674650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr16:49674501-49674650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | ZNF423 (0bp away) |
| ANODEV p-value | 0.000557218746166 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41041 | ZNF423 | 11393 | uc010vgn.3 | chr16 | 49524515 | 49698136 | - | 150 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 41041 | ZNF423 | 11393 | uc031qwd.1 | chr16 | 49524515 | 49856649 | - | 150 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 41041 | ZNF423 | 11393 | uc031qwe.1 | chr16 | 49524515 | 49891830 | - | 150 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41041 | chr16 | 49674526 | 49674855 | wgEncodeRegDnaseClusteredV2 | 13 | score:367, srow:447257 |
| 41041 | chr16 | 49674609 | 49674848 | wgEncodeRegTfbsClusteredV3 | USF1 | score:256, expCount:1, expNums:265, expScores:256, srow:1521976 |
| 41041 | chr16 | 49674648 | 49674664 | tfbsConsSites | V$PPARG_03 | score:785, zScore:1.88, srow:1947199 |
| 41041 | chr16 | 49672726 | 49674725 | cpgShore | — | values(x.gr)[overs$srow, ]:16920 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41041 | cellmeth_recounts | PrEC: 5, LNCaP: 0, DU145: 0 |  |
| 41041 | cellexp | id=ENSG00000102935, name=ZNF423, PrEC=9, str=11, LNCaP=18, str=0, DU145=1, str=0 |  |
| 41041 | tcgaexp | gene=ZNF423, entrez=23090, pos=chr16:49524515-49891830(-), B=956, L=585, M=529, H=560 |  |
| 41041 | pubmed | gene=ZNF423, G=17, GP=0, GC=9, GM=3, GPM=0, GCM=2 |  |