DMR 41088 chr17:754351-754550 (200bp)
| DMR Stats | |
|---|---|
| Position | chr17:754351-754550 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | NXN (0bp away) |
| ANODEV p-value | 0.00334013969597 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41088 | NXN | 11889 | uc002fsa.3 | chr17 | 702553 | 882998 | - | 200 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 41088 | NXN | 11890 | uc002fsb.2 | chr17 | 722368 | 800254 | - | 200 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 41088 | NXN | 11889 | uc010vqe.2 | chr17 | 702553 | 767351 | - | 200 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41088 | chr17 | 754121 | 754655 | wgEncodeRegDnaseClusteredV2 | 52 | score:1000, srow:471478 |
| 41088 | chr17 | 754410 | 754418 | tfbsConsSites | V$ZIC1_01 | score:969, zScore:2.68, srow:2057515 |
| 41088 | chr17 | 754410 | 754418 | tfbsConsSites | V$ZIC2_01 | score:936, zScore:2.51, srow:2057516 |
| 41088 | chr17 | 754410 | 754418 | tfbsConsSites | V$ZIC3_01 | score:971, zScore:2.66, srow:2057517 |
| 41088 | chr17 | 754332 | 754370 | phastConsElements100way | lod=74 | score:420, srow:3520662 |
| 41088 | chr17 | 754373 | 754390 | phastConsElements100way | lod=41 | score:361, srow:3520663 |
| 41088 | chr17 | 754400 | 754417 | phastConsElements100way | lod=27 | score:320, srow:3520664 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41088 | cellmeth_recounts | PrEC: 0, LNCaP: 1, DU145: 12 |  |
| 41088 | cellexp | id=ENSG00000167693, name=NXN, PrEC=14170, str=7994, LNCaP=1525, str=1905, DU145=11809, str=9379 |  |
| 41088 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 41088 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 41088 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 41088 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 41088 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 41088 | tcgaexp | gene=NXN, entrez=64359, pos=chr17:702553-882998(-), B=5704, L=5393, M=4923, H=3951 |  |
| 41088 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 41088 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 41088 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |