DMR 41191 chr17:19483451-19484200 (750bp)
| DMR Stats | |
|---|---|
| Position | chr17:19483451-19484200 (View on UCSC) |
| Width | 750bp |
| Genomic Context | intergenic |
| Nearest Genes | SLC47A1 (1104bp away) |
| ANODEV p-value | 3.96114007987e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41191 | chr17 | 19483186 | 19483715 | wgEncodeRegDnaseClusteredV2 | 42 | score:1000, srow:483757 |
| 41191 | chr17 | 19483256 | 19483875 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:424, expCount:4, expNums:17,19,40,43, expScores:196,134,424,323, srow:1649444 |
| 41191 | chr17 | 19483571 | 19483594 | tfbsConsSites | V$HTF_01 | score:768, zScore:1.82, srow:2110968 |
| 41191 | chr17 | 19483599 | 19483614 | tfbsConsSites | V$TAL1ALPHAE47_01 | score:873, zScore:1.88, srow:2110969 |
| 41191 | chr17 | 19483599 | 19483614 | tfbsConsSites | V$TAL1BETAE47_01 | score:846, zScore:1.84, srow:2110970 |
| 41191 | chr17 | 19483601 | 19483612 | tfbsConsSites | V$AREB6_03 | score:924, zScore:2.46, srow:2110971 |
| 41191 | chr17 | 19483545 | 19483551 | phastConsElements100way | lod=31 | score:333, srow:3608516 |
| 41191 | chr17 | 19483556 | 19483558 | phastConsElements100way | lod=35 | score:345, srow:3608517 |
| 41191 | chr17 | 19483560 | 19483564 | phastConsElements100way | lod=34 | score:343, srow:3608518 |
| 41191 | chr17 | 19483568 | 19483569 | phastConsElements100way | lod=25 | score:312, srow:3608519 |
| 41191 | chr17 | 19483574 | 19483575 | phastConsElements100way | lod=15 | score:262, srow:3608520 |
| 41191 | chr17 | 19483583 | 19483590 | phastConsElements100way | lod=52 | score:385, srow:3608521 |
| 41191 | chr17 | 19483593 | 19483593 | phastConsElements100way | lod=14 | score:255, srow:3608522 |
| 41191 | chr17 | 19483595 | 19483602 | phastConsElements100way | lod=81 | score:429, srow:3608523 |
| 41191 | chr17 | 19483604 | 19483605 | phastConsElements100way | lod=22 | score:300, srow:3608524 |
| 41191 | chr17 | 19483607 | 19483614 | phastConsElements100way | lod=64 | score:405, srow:3608525 |
| 41191 | chr17 | 19483619 | 19483626 | phastConsElements100way | lod=49 | score:379, srow:3608526 |
| 41191 | chr17 | 19483631 | 19483632 | phastConsElements100way | lod=32 | score:337, srow:3608527 |
| 41191 | chr17 | 19483637 | 19483638 | phastConsElements100way | lod=13 | score:247, srow:3608528 |
| 41191 | chr17 | 19483640 | 19483641 | phastConsElements100way | lod=20 | score:290, srow:3608529 |
| 41191 | chr17 | 19483649 | 19483654 | phastConsElements100way | lod=61 | score:400, srow:3608530 |
| 41191 | chr17 | 19483306 | 19483687 | cpgIsland | CpG: 46 | length:382, cpgNum:46, gcNum:272, perCpg:24.1, perGc:71.2, obsExp:0.96, srow:10289 |
| 41191 | chr17 | 19483688 | 19485687 | cpgShore | — | values(x.gr)[overs$srow, ]:18776 |
- 23 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41191 | cellmeth_recounts | PrEC: 18, LNCaP: 1719, DU145: 85 |  |
| 41191 | cellmeth_diffreps_PrECvsLNCaP | A=29, B=1958, Length=1640, Event=Up, log2FC=6.08, padj=0 |  |
| 41191 | cellmeth_diffreps_PrECvsDU145 | A=6, B=41, Length=440, Event=Up, log2FC=2.77, padj=4.97719223247681e-06 |  |
| 41191 | cellmeth_diffreps_PrECvsDU145 | A=2, B=21, Length=360, Event=Up, log2FC=3.39, padj=0.000873494998786926 |  |
| 41191 | cellmeth_diffreps_LNCaPvsDU145 | A=2093.19, B=74.83, Length=1640, Event=Down, log2FC=-4.81, padj=0 |  |
| 41191 | cellexp | id=ENSG00000228983, name=AC025627.7, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=2 |  |
| 41191 | cellexp | id=ENSG00000262769, name=RP11-1113L8.1, PrEC=2, str=0, LNCaP=0, str=0, DU145=1, str=2 |  |
| 41191 | tcgameth | site:cg03748503, B=0.14, L=0.27, H=0.3 |  |
| 41191 | tcgameth | site:cg13540171, B=0.3, L=0.52, H=0.49 |  |
| 41191 | tcgameth | site:cg14033514, B=0.34, L=0.51, H=0.49 |  |
| 41191 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 41191 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 41191 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 41191 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 41191 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 41191 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 41191 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 41191 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 41191 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 41191 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 41191 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 41191 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 41191 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 41191 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 41191 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 41191 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 41191 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |
| 41191 | pubmed | gene=SLC47A1, G=51, GP=0, GC=5, GM=0, GPM=0, GCM=0 |  |