DMR 41290 chr17:43220801-43220950 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:43220801-43220950 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | ACBD4 (0bp away) |
| ANODEV p-value | 0.0090031884998 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41290 | ACBD4 | 12958 | uc002iic.3 | chr17 | 43213014 | 43221543 | + | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (6), E9 (94) | 100.0 |
| 41290 | ACBD4 | 12958 | uc002iie.3 | chr17 | 43213014 | 43221543 | + | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (6), E10 (94) | 100.0 |
| 41290 | ACBD4 | 12958 | uc002iif.3 | chr17 | 43213014 | 43221543 | + | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (6), E10 (94) | 100.0 |
| 41290 | ACBD4 | 12958 | uc010dae.3 | chr17 | 43213014 | 43221543 | + | 150 | 100.0 | 0.64 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (6), E8 (94) | 100.0 |
| 41290 | ACBD4 | 12958 | uc010wjj.2 | chr17 | 43209967 | 43221543 | + | 150 | 100.0 | 0.64 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (6), E12 (94) | 100.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41290 | chr17 | 43220901 | 43222912 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:382, expCount:8, expNums:62,105,207,334,338,403,445,622, expScores:203,382,245,268,293,268,91,199, srow:1709350 |
| 41290 | chr17 | 43220789 | 43220809 | tfbsConsSites | V$PAX6_01 | score:761, zScore:1.78, srow:2171007 |
| 41290 | chr17 | 43220840 | 43220855 | tfbsConsSites | V$ARP1_01 | score:790, zScore:1.69, srow:2171008 |
| 41290 | chr17 | 43220876 | 43220876 | cosmic | COSM1479657 | srow:504198 |
| 41290 | chr17 | 43220876 | 43220876 | cosmic | COSM1479658 | srow:504199 |
| 41290 | chr17 | 43220922 | 43220922 | cosmic | COSM980114 | srow:504200 |
| 41290 | chr17 | 43220922 | 43220922 | cosmic | COSM980115 | srow:504201 |
| 41290 | chr17 | 43220941 | 43220941 | cosmic | COSM1679875 | srow:504202 |
| 41290 | chr17 | 43220804 | 43220810 | phastConsElements100way | lod=22 | score:300, srow:3716924 |
| 41290 | chr17 | 43220840 | 43220847 | phastConsElements100way | lod=48 | score:377, srow:3716925 |
| 41290 | chr17 | 43220852 | 43220856 | phastConsElements100way | lod=30 | score:330, srow:3716926 |
| 41290 | chr17 | 43220868 | 43220877 | phastConsElements100way | lod=46 | score:373, srow:3716927 |
| 41290 | chr17 | 43220880 | 43220922 | phastConsElements100way | lod=241 | score:536, srow:3716928 |
| 41290 | chr17 | 43220927 | 43220938 | phastConsElements100way | lod=105 | score:454, srow:3716929 |
| 41290 | chr17 | 43219928 | 43221927 | cpgShore | — | values(x.gr)[overs$srow, ]:19547 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41290 | cellmeth_recounts | PrEC: 2, LNCaP: 33, DU145: 5 |  |
| 41290 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=281, Length=1680, Event=Up, log2FC=3.43, padj=0 |  |
| 41290 | cellmeth_diffreps_LNCaPvsDU145 | A=62, B=8.42, Length=680, Event=Down, log2FC=-2.88, padj=4.34462417448251e-09 |  |
| 41290 | cellexp | id=ENSG00000181513, name=ACBD4, PrEC=318, str=219, LNCaP=1369, str=517, DU145=1271, str=498 |  |
| 41290 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 41290 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 41290 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 41290 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 41290 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 41290 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 41290 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 41290 | tcgaexp | gene=ACBD4, entrez=79777, pos=chr17:43209967-43221543(+), B=1034, L=1070, M=920, H=782 |  |
| 41290 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 41290 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 41290 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 41290 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 41290 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 41290 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 41290 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 41290 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 41290 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 41290 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |