DMR 41317 chr17:48915901-48916150 (250bp)

DMR Stats
Positionchr17:48915901-48916150 (View on UCSC)
Width250bp
Genomic Contextintron
Nearest GenesWFIKKN2 (0bp away)
ANODEV p-value1.25289498515e-05
FrequenciesBenign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41317 WFIKKN2 13107 uc002isv.4 chr17 48912605 48919709 + 250 100.0 0.19 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
41317 WFIKKN2 13107 uc010dbu.3 chr17 48912011 48919709 + 250 100.0 0.19 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41317 chr17 48915721 48916055 wgEncodeRegDnaseClusteredV2 9 score:699, srow:502075
41317 chr17 48916066 48916375 wgEncodeRegDnaseClusteredV2 17 score:682, srow:502076
41317 chr17 48915859 48916158 wgEncodeRegTfbsClusteredV3 RXRA score:196, expCount:1, expNums:194, expScores:196, srow:1730450
41317 chr17 48915969 48915981 tfbsConsSites V$CHOP_01 score:855, zScore:2.24, srow:2192275
41317 chr17 48915880 48915909 phastConsElements100way lod=52 score:385, srow:3750114
41317 chr17 48915915 48915923 phastConsElements100way lod=54 score:388, srow:3750115
41317 chr17 48915926 48915943 phastConsElements100way lod=105 score:454, srow:3750116
41317 chr17 48915950 48915976 phastConsElements100way lod=97 score:446, srow:3750117
41317 chr17 48915789 48917788 cpgShore — values(x.gr)[overs$srow, ]:19856
  • 9 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41317 cellmeth_recounts PrEC: 3, LNCaP: 0, DU145: 4
41317 cellexp id=ENSG00000173714, name=WFIKKN2, PrEC=1, str=0, LNCaP=0, str=0, DU145=1, str=0
41317 tcgaexp gene=WFIKKN2, entrez=124857, pos=chr17:48912011-48919709(+), B=70, L=50, M=30, H=25
41317 pubmed gene=WFIKKN2, G=5, GP=0, GC=0, GM=0, GPM=0, GCM=0