DMR 41336 chr17:56790101-56790250 (150bp)

DMR Stats
Positionchr17:56790101-56790250 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesRAD51C (0bp away)
ANODEV p-value0.0346690185511
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41336 RAD51C 13167 uc002iwu.3 chr17 56769963 56811692 + 150 100.0 2.95 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
41336 RAD51C 13167 uc002iww.3 chr17 56769963 56811692 + 150 100.0 2.95 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
41336 RAD51C 13167 uc010woa.1 chr17 56769963 56810127 + 150 100.0 2.95 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41336 chr17 56789760 56790143 wgEncodeRegTfbsClusteredV3 POLR2A score:283, expCount:1, expNums:632, expScores:283, srow:1745223
41336 chr17 56789907 56790376 wgEncodeRegTfbsClusteredV3 GATA3 score:188, expCount:1, expNums:571, expScores:188, srow:1745224
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41336 cellmeth_recounts PrEC: 3, LNCaP: 3, DU145: 3
41336 cellexp id=ENSG00000108384, name=RAD51C, PrEC=1330, str=499, LNCaP=2151, str=3351, DU145=1300, str=1405
41336 tcgaexp gene=RAD51C, entrez=5889, pos=chr17:56769963-56811692(+), B=934, L=939, M=943, H=926