DMR 41464 chr17:80744901-80745350 (450bp)
| DMR Stats | |
|---|---|
| Position | chr17:80744901-80745350 (View on UCSC) |
| Width | 450bp |
| Genomic Context | intron |
| Nearest Genes | TBCD (0bp away) |
| ANODEV p-value | 0.000143282085108 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41464 | TBCD | 13592 | uc002kfx.1 | chr17 | 80709940 | 80881609 | + | 450 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0) | 0.0 |
| 41464 | TBCD | 13592 | uc002kfy.1 | chr17 | 80709940 | 80899359 | + | 450 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0) | 0.0 |
| 41464 | TBCD | 13592 | uc002kfz.3 | chr17 | 80709940 | 80901062 | + | 450 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41464 | chr17 | 80744806 | 80744975 | wgEncodeRegDnaseClusteredV2 | 4 | score:217, srow:523768 |
| 41464 | chr17 | 80744986 | 80745315 | wgEncodeRegDnaseClusteredV2 | 36 | score:1000, srow:523769 |
| 41464 | chr17 | 80744842 | 80745351 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:494, expCount:2, expNums:563,564, expScores:494,181, srow:1821942 |
| 41464 | chr17 | 80744935 | 80745234 | wgEncodeRegTfbsClusteredV3 | MYC | score:393, expCount:2, expNums:560,561, expScores:393,242, srow:1821943 |
| 41464 | chr17 | 80744948 | 80745337 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:271, expCount:4, expNums:566,567,568,569, expScores:271,145,136,136, srow:1821944 |
| 41464 | chr17 | 80744989 | 80745298 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:151, expCount:1, expNums:562, expScores:151, srow:1821945 |
| 41464 | chr17 | 80745019 | 80745299 | wgEncodeRegTfbsClusteredV3 | FOS | score:343, expCount:4, expNums:556,557,558,559, expScores:332,315,343,282, srow:1821946 |
| 41464 | chr17 | 80745304 | 80745607 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:118, expCount:1, expNums:117, expScores:118, srow:1821947 |
| 41464 | chr17 | 80745098 | 80745121 | tfbsConsSites | V$COMP1_01 | score:813, zScore:2.27, srow:2270710 |
| 41464 | chr17 | 80745164 | 80745175 | tfbsConsSites | V$CREB_Q2 | score:880, zScore:2.28, srow:2270711 |
| 41464 | chr17 | 80745196 | 80745210 | tfbsConsSites | V$ISRE_01 | score:782, zScore:1.7, srow:2270712 |
| 41464 | chr17 | 80745197 | 80745211 | tfbsConsSites | V$TST1_01 | score:855, zScore:2.19, srow:2270713 |
| 41464 | chr17 | 80745132 | 80745135 | phastConsElements100way | lod=18 | score:280, srow:3883097 |
| 41464 | chr17 | 80745153 | 80745157 | phastConsElements100way | lod=15 | score:262, srow:3883098 |
| 41464 | chr17 | 80745165 | 80745167 | phastConsElements100way | lod=16 | score:268, srow:3883099 |
| 41464 | chr17 | 80742930 | 80744929 | cpgShelf | — | values(x.gr)[overs$srow, ]:17763 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41464 | cellmeth_recounts | PrEC: 0, LNCaP: 4, DU145: 6 |  |
| 41464 | cellexp | id=ENSG00000141556, name=TBCD, PrEC=8721, str=3004, LNCaP=9689, str=7669, DU145=6718, str=6071 |  |
| 41464 | tcgameth | site:cg04029455, B=0.5, L=0.8, H=0.75 |  |
| 41464 | tcgameth | site:cg10862567, B=0.38, L=0.71, H=0.72 |  |
| 41464 | tcgaexp | gene=TBCD, entrez=6904, pos=chr17:80709940-80901062(+), B=4203, L=5591, M=5496, H=5128 |  |
| 41464 | pubmed | gene=TBCD, G=29, GP=0, GC=3, GM=0, GPM=0, GCM=0 |  |