DMR 41476 chr18:377251-377450 (200bp)

DMR Stats
Positionchr18:377251-377450 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesCOLEC12 (0bp away)
ANODEV p-value0.0298175662801
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41476 COLEC12 13632 uc002kkm.3 chr18 319355 500729 - 200 100.0 0.34 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41476 chr18 377141 377415 wgEncodeRegDnaseClusteredV2 17 score:655, srow:524416
41476 chr18 377426 377450 wgEncodeRegDnaseClusteredV2 2 score:117, srow:524417
41476 chr18 377119 377454 wgEncodeRegTfbsClusteredV3 YY1 score:193, expCount:1, expNums:162, expScores:193, srow:1823724
41476 chr18 377151 377480 wgEncodeRegTfbsClusteredV3 MAX score:311, expCount:1, expNums:352, expScores:311, srow:1823725
41476 chr18 377190 377432 wgEncodeRegTfbsClusteredV3 USF1 score:310, expCount:2, expNums:161,265, expScores:310,190, srow:1823726
41476 chr18 377232 377507 wgEncodeRegTfbsClusteredV3 USF2 score:171, expCount:1, expNums:360, expScores:171, srow:1823727
41476 chr18 377270 377285 tfbsConsSites V$TAL1ALPHAE47_01 score:868, zScore:1.8, srow:2275008
41476 chr18 377270 377285 tfbsConsSites V$TAL1BETAE47_01 score:874, zScore:2.26, srow:2275009
41476 chr18 377270 377285 tfbsConsSites V$TAL1BETAITF2_01 score:865, zScore:2.04, srow:2275010
41476 chr18 377267 377289 phastConsElements100way lod=54 score:388, srow:3891902
  • 10 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41476 cellmeth_recounts PrEC: 1, LNCaP: 0, DU145: 0
41476 cellexp id=ENSG00000158270, name=COLEC12, PrEC=0, str=7, LNCaP=1800, str=1920, DU145=11, str=3
41476 tcgaexp gene=COLEC12, entrez=81035, pos=chr18:319355-500729(-), B=2337, L=5140, M=5100, H=4694