DMR 41503 chr18:12362601-12362750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr18:12362601-12362750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | AFG3L2 (0bp away) |
| ANODEV p-value | 0.000858903205437 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41503 | AFG3L2 | 13756 | uc002kqz.2 | chr18 | 12328943 | 12377275 | - | 150 | 100.0 | 0.47 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41503 | chr18 | 12362686 | 12362835 | wgEncodeRegDnaseClusteredV2 | 3 | score:143, srow:530265 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41503 | cellmeth_recounts | PrEC: 2, LNCaP: 1, DU145: 0 |  |
| 41503 | cellexp | id=ENSG00000141385, name=AFG3L2, PrEC=4305, str=2046, LNCaP=4385, str=5926, DU145=4630, str=6474 |  |
| 41503 | tcgaexp | gene=AFG3L2, entrez=10939, pos=chr18:12328943-12377275(-), B=3487, L=3967, M=3820, H=3682 |  |
| 41503 | pubmed | gene=AFG3L2, G=46, GP=0, GC=2, GM=1, GPM=0, GCM=0 |  |