DMR 41576 chr19:678551-678700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr19:678551-678700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | FSTL3 (0bp away) |
| ANODEV p-value | 0.0114167286549 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41576 | FSTL3 | 14111 | uc002lpk.1 | chr19 | 676389 | 683392 | + | 150 | 100.0 | 100.0 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41576 | chr19 | 675882 | 679786 | cpgShore | — | values(x.gr)[overs$srow, ]:22046 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41576 | cellmeth_recounts | PrEC: 17, LNCaP: 50, DU145: 12 |  |
| 41576 | cellmeth_diffreps_LNCaPvsDU145 | A=68.42, B=12.16, Length=500, Event=Down, log2FC=-2.49, padj=1.67324926253214e-08 |  |
| 41576 | cellexp | id=ENSG00000070404, name=FSTL3, PrEC=12257, str=24128, LNCaP=1058, str=413, DU145=5794, str=5939 |  |
| 41576 | tcgaexp | gene=FSTL3, entrez=10272, pos=chr19:676389-683392(+), B=1582, L=1724, M=1194, H=1245 |  |