DMR 41579 chr19:903201-903400 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:903201-903400 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | R3HDM4 (0bp away) |
| ANODEV p-value | 0.00281209468979 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41579 | R3HDM4 | 14125 | uc002lqg.2 | chr19 | 896503 | 913225 | - | 200 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41579 | chr19 | 903261 | 903770 | wgEncodeRegDnaseClusteredV2 | 23 | score:1000, srow:556239 |
| 41579 | chr19 | 902879 | 903234 | wgEncodeRegTfbsClusteredV3 | RCOR1 | score:264, expCount:2, expNums:491,492, expScores:184,264, srow:1910463 |
| 41579 | chr19 | 903131 | 903534 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:178, expCount:1, expNums:247, expScores:178, srow:1910465 |
| 41579 | chr19 | 903308 | 903314 | phastConsElements100way | lod=13 | score:247, srow:4122426 |
| 41579 | chr19 | 901721 | 903720 | cpgShelf | — | values(x.gr)[overs$srow, ]:18751 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41579 | cellmeth_recounts | PrEC: 22, LNCaP: 37, DU145: 5 |  |
| 41579 | cellmeth_diffreps_PrECvsLNCaP | A=76, B=37, Length=260, Event=Down, log2FC=-1.04, padj=0.00653713950635205 |  |
| 41579 | cellmeth_diffreps_PrECvsDU145 | A=84, B=18, Length=440, Event=Down, log2FC=-2.22, padj=1.1816777045078e-09 |  |
| 41579 | cellmeth_diffreps_LNCaPvsDU145 | A=52.38, B=7.48, Length=400, Event=Down, log2FC=-2.81, padj=2.41728365678465e-07 |  |
| 41579 | cellexp | id=ENSG00000198858, name=R3HDM4, PrEC=5652, str=4477, LNCaP=4273, str=3357, DU145=3186, str=2582 |  |
| 41579 | tcgaexp | gene=R3HDM4, entrez=91300, pos=chr19:896503-913225(-), B=3630, L=3959, M=4035, H=4007 |  |