DMR 41582 chr19:979251-979450 (200bp)

DMR Stats
Positionchr19:979251-979450 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesWDR18 (4877bp away)
ANODEV p-value0.00367816207238
FrequenciesBenign: 2.0 (28.57%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41582 chr19 979266 979815 wgEncodeRegDnaseClusteredV2 26 score:637, srow:556314
41582 chr19 979156 979731 wgEncodeRegTfbsClusteredV3 KDM5B score:219, expCount:1, expNums:31, expScores:219, srow:1911388
41582 chr19 979173 979796 wgEncodeRegTfbsClusteredV3 PHF8 score:251, expCount:1, expNums:30, expScores:251, srow:1911389
41582 chr19 979432 979835 wgEncodeRegTfbsClusteredV3 ZBTB7A score:162, expCount:1, expNums:247, expScores:162, srow:1911390
41582 chr19 979436 979858 wgEncodeRegTfbsClusteredV3 RELA score:672, expCount:9, expNums:282,300,325,327,329,333,335,337,339, expScores:257,228,672,130,190,149,265,275,228, srow:1911391
41582 chr19 979393 979410 tfbsConsSites V$AP4_01 score:816, zScore:1.74, srow:2412333
41582 chr19 979400 979419 tfbsConsSites V$P53_01 score:745, zScore:2.92, srow:2412334
41582 chr19 979351 979362 phastConsElements100way lod=18 score:280, srow:4122911
41582 chr19 978690 980689 cpgShelf — values(x.gr)[overs$srow, ]:18757
  • 9 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41582 cellmeth_recounts PrEC: 6, LNCaP: 9, DU145: 9
41582 cellmeth_diffreps_LNCaPvsDU145 A=1.07, B=15.9, Length=200, Event=Up, log2FC=3.89, padj=0.00708953135814864
41582 tcgameth site:cg24402332, B=0.64, L=0.8, H=0.78