DMR 41588 chr19:1210251-1210550 (300bp)
| DMR Stats | |
|---|---|
| Position | chr19:1210251-1210550 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | STK11 (0bp away) |
| ANODEV p-value | 3.56654829286e-06 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41588 | STK11 | 14138 | uc002lrl.1 | chr19 | 1205798 | 1228434 | + | 300 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41588 | chr19 | 1210246 | 1210670 | wgEncodeRegDnaseClusteredV2 | 8 | score:516, srow:556578 |
| 41588 | chr19 | 1209749 | 1210392 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:329, expCount:2, expNums:146,229, expScores:231,329, srow:1913587 |
| 41588 | chr19 | 1210355 | 1210364 | tfbsConsSites | V$HSF1_01 | score:915, zScore:2.26, srow:2413165 |
| 41588 | chr19 | 1210355 | 1210364 | tfbsConsSites | V$HSF2_01 | score:942, zScore:2.17, srow:2413166 |
| 41588 | chr19 | 1206913 | 1220459 | cosmic | COSM51202 | srow:551154 |
| 41588 | chr19 | 1206913 | 1226646 | cosmic | COSM27023 | srow:551155 |
| 41588 | chr19 | 1210289 | 1210302 | phastConsElements100way | lod=21 | score:295, srow:4125465 |
| 41588 | chr19 | 1210314 | 1210323 | phastConsElements100way | lod=26 | score:316, srow:4125466 |
| 41588 | chr19 | 1209423 | 1211422 | cpgShelf | — | values(x.gr)[overs$srow, ]:18783 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41588 | cellmeth_recounts | PrEC: 14, LNCaP: 55, DU145: 6 |  |
| 41588 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=14, Length=280, Event=Up, log2FC=Inf, padj=0.000432533284720616 |  |
| 41588 | cellmeth_diffreps_PrECvsDU145 | A=21, B=2, Length=340, Event=Down, log2FC=-3.39, padj=0.000873494998786926 |  |
| 41588 | cellmeth_diffreps_LNCaPvsDU145 | A=44.9, B=3.74, Length=400, Event=Down, log2FC=-3.58, padj=5.11602699624955e-08 |  |
| 41588 | cellexp | id=ENSG00000118046, name=STK11, PrEC=5191, str=2796, LNCaP=6383, str=3323, DU145=2279, str=1811 |  |
| 41588 | tcgaexp | gene=STK11, entrez=6794, pos=chr19:1205798-1228434(+), B=2768, L=3187, M=3081, H=2916 |  |
| 41588 | pubmed | gene=STK11, G=970, GP=9, GC=662, GM=31, GPM=0, GCM=29 |  |