DMR 41623 chr19:3053601-3053800 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:3053601-3053800 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | AES (0bp away) |
| ANODEV p-value | 5.34404399932e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41623 | AES | 14210 | uc002lwx.1 | chr19 | 3052908 | 3056766 | - | 200 | 100.0 | 0.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 41623 | AES | 14211 | uc002lwy.1 | chr19 | 3052908 | 3062371 | - | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
| 41623 | AES | 14211 | uc002lwz.1 | chr19 | 3052908 | 3062371 | - | 200 | 100.0 | 0.7 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
| 41623 | AES | 14211 | uc002lxb.1 | chr19 | 3052908 | 3062964 | - | 200 | 100.0 | 0.5 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41623 | chr19 | 3053206 | 3053715 | wgEncodeRegDnaseClusteredV2 | 13 | score:559, srow:558354 |
| 41623 | chr19 | 3053362 | 3053605 | wgEncodeRegTfbsClusteredV3 | REST | score:115, expCount:1, expNums:167, expScores:115, srow:1925257 |
| 41623 | chr19 | 3053378 | 3053693 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:366, expCount:2, expNums:86,292, expScores:302,366, srow:1925258 |
| 41623 | chr19 | 3053781 | 3053793 | tfbsConsSites | V$MAZR_01 | score:884, zScore:2.07, srow:2416983 |
| 41623 | chr19 | 3053783 | 3053795 | tfbsConsSites | V$MZF1_02 | score:944, zScore:3.21, srow:2416984 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41623 | cellmeth_recounts | PrEC: 0, LNCaP: 24, DU145: 8 |  |
| 41623 | cellmeth_diffreps_PrECvsLNCaP | A=14, B=116, Length=940, Event=Up, log2FC=3.05, padj=0 |  |
| 41623 | cellmeth_diffreps_PrECvsDU145 | A=0, B=15, Length=340, Event=Up, log2FC=Inf, padj=0.000269565104641442 |  |
| 41623 | cellmeth_diffreps_LNCaPvsDU145 | A=89.8, B=4.68, Length=500, Event=Down, log2FC=-4.26, padj=0 |  |
| 41623 | cellexp | id=ENSG00000104964, name=AES, PrEC=11160, str=6100, LNCaP=10250, str=5009, DU145=10145, str=7611 |  |
| 41623 | cellexp | id=ENSG00000267469, name=AC005944.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 41623 | tcgaexp | gene=AES, entrez=166, pos=chr19:3052908-3062964(-), B=30055, L=27480, M=26988, H=23406 |  |
| 41623 | pubmed | gene=AES, G=7867, GP=85, GC=1163, GM=6, GPM=0, GCM=2 |  |