DMR 41624 chr19:3055051-3055250 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:3055051-3055250 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | AES (0bp away) |
| ANODEV p-value | 1.82281026091e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41624 | AES | 14210 | uc002lwx.1 | chr19 | 3052908 | 3056766 | - | 200 | 100.0 | 0.83 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 0.0 |
| 41624 | AES | 14211 | uc002lwy.1 | chr19 | 3052908 | 3062371 | - | 200 | 100.0 | 0.73 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
| 41624 | AES | 14211 | uc002lwz.1 | chr19 | 3052908 | 3062371 | - | 200 | 100.0 | 0.77 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
| 41624 | AES | 14211 | uc002lxb.1 | chr19 | 3052908 | 3062964 | - | 200 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41624 | chr19 | 3055001 | 3056990 | wgEncodeRegDnaseClusteredV2 | 63 | score:1000, srow:558359 |
| 41624 | chr19 | 3054658 | 3055375 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:457, expCount:3, expNums:104,105,522, expScores:457,359,189, srow:1925261 |
| 41624 | chr19 | 3055060 | 3055243 | wgEncodeRegTfbsClusteredV3 | CTCF | score:115, expCount:1, expNums:606, expScores:115, srow:1925262 |
| 41624 | chr19 | 3055159 | 3055734 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:275, expCount:1, expNums:66, expScores:275, srow:1925263 |
| 41624 | chr19 | 3055201 | 3055604 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:220, expCount:1, expNums:397, expScores:220, srow:1925264 |
| 41624 | chr19 | 3055220 | 3055549 | wgEncodeRegTfbsClusteredV3 | EP300 | score:154, expCount:1, expNums:401, expScores:154, srow:1925265 |
| 41624 | chr19 | 3055226 | 3055729 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:246, expCount:1, expNums:414, expScores:246, srow:1925266 |
| 41624 | chr19 | 3055233 | 3055572 | wgEncodeRegTfbsClusteredV3 | JUN | score:384, expCount:1, expNums:381, expScores:384, srow:1925267 |
| 41624 | chr19 | 3055246 | 3055549 | wgEncodeRegTfbsClusteredV3 | ESR1 | score:158, expCount:1, expNums:74, expScores:158, srow:1925268 |
| 41624 | chr19 | 3055247 | 3055566 | wgEncodeRegTfbsClusteredV3 | JUND | score:650, expCount:1, expNums:393, expScores:650, srow:1925269 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41624 | cellmeth_recounts | PrEC: 0, LNCaP: 78, DU145: 3 |  |
| 41624 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=63, Length=500, Event=Up, log2FC=Inf, padj=0 |  |
| 41624 | cellmeth_diffreps_LNCaPvsDU145 | A=67.35, B=1.87, Length=440, Event=Down, log2FC=-5.17, padj=0 |  |
| 41624 | cellexp | id=ENSG00000104964, name=AES, PrEC=11160, str=6100, LNCaP=10250, str=5009, DU145=10145, str=7611 |  |
| 41624 | tcgaexp | gene=AES, entrez=166, pos=chr19:3052908-3062964(-), B=30055, L=27480, M=26988, H=23406 |  |
| 41624 | pubmed | gene=AES, G=7867, GP=85, GC=1163, GM=6, GPM=0, GCM=2 |  |