DMR 41723 chr19:13962401-13962550 (150bp)

DMR Stats
Positionchr19:13962401-13962550 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesLOC284454 (14927bp away)
ANODEV p-value0.0317936216445
FrequenciesBenign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41723 chr19 13962306 13962555 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:566418
41723 chr19 13961212 13962699 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:33, expNums:11,22,32,41,61,62,78,163,168,192,206,207,229,259,402,403,445,446,461,465,523,525,563,577,583,599,613,619,622,632,633,634,637, expScores:236,126,206,151,288,274,533,236,1000,276,447,256,530,464,291,227,148,246,163,231,202,232,210,289,630,137,364,121,253,296,401,211,122, srow:1967977
41723 chr19 13961756 13962405 wgEncodeRegTfbsClusteredV3 SMARCC1 score:452, expCount:1, expNums:371, expScores:452, srow:1968006
41723 chr19 13961769 13962448 wgEncodeRegTfbsClusteredV3 SMARCA4 score:197, expCount:1, expNums:377, expScores:197, srow:1968007
41723 chr19 13961852 13962470 wgEncodeRegTfbsClusteredV3 TAF1 score:272, expCount:2, expNums:169,199, expScores:138,272, srow:1968009
41723 chr19 13961929 13962637 wgEncodeRegTfbsClusteredV3 HMGN3 score:362, expCount:1, expNums:501, expScores:145, srow:1968020
41723 chr19 13961950 13962465 wgEncodeRegTfbsClusteredV3 TFAP2C score:156, expCount:1, expNums:370, expScores:156, srow:1968025
41723 chr19 13961977 13962529 wgEncodeRegTfbsClusteredV3 FOS score:1000, expCount:8, expNums:379,457,478,556,557,558,559,590, expScores:469,168,679,1000,599,536,1000,1000, srow:1968033
41723 chr19 13962011 13962545 wgEncodeRegTfbsClusteredV3 ZBTB7A score:905, expCount:2, expNums:205,247, expScores:268,314, srow:1968040
41723 chr19 13962331 13962574 wgEncodeRegTfbsClusteredV3 EGR1 score:188, expCount:1, expNums:216, expScores:188, srow:1968047
41723 chr19 13962352 13962607 wgEncodeRegTfbsClusteredV3 CEBPB score:270, expCount:1, expNums:462, expScores:270, srow:1968048
41723 chr19 13962399 13962409 tfbsConsSites V$BACH2_01 score:867, zScore:1.72, srow:2436242
41723 chr19 13962399 13962409 tfbsConsSites V$AP1FJ_Q2 score:926, zScore:2.04, srow:2436243
41723 chr19 13962437 13962455 tfbsConsSites V$AHRARNT_02 score:779, zScore:1.83, srow:2436244
41723 chr19 13962451 13962464 tfbsConsSites V$CHX10_01 score:811, zScore:1.84, srow:2436245
41723 chr19 13962452 13962467 tfbsConsSites V$S8_01 score:924, zScore:2.83, srow:2436246
41723 chr19 13962457 13962469 tfbsConsSites V$AP1_01 score:866, zScore:1.78, srow:2436247
41723 chr19 13962399 13962407 phastConsElements100way lod=30 score:330, srow:4190110
41723 chr19 13962420 13962426 phastConsElements100way lod=24 score:308, srow:4190111
41723 chr19 13962460 13962467 phastConsElements100way lod=40 score:359, srow:4190112
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41723 cellmeth_recounts PrEC: 0, LNCaP: 78, DU145: 0
41723 cellmeth_diffreps_PrECvsLNCaP A=0, B=64, Length=440, Event=Up, log2FC=Inf, padj=0
41723 cellmeth_diffreps_LNCaPvsDU145 A=68.42, B=0, Length=440, Event=Down, log2FC=-Inf, padj=0