DMR 41833 chr19:38042351-38042650 (300bp)
| DMR Stats | |
|---|---|
| Position | chr19:38042351-38042650 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | ZNF571-AS1, ZNF540 (0bp away) |
| ANODEV p-value | 1.84380591464e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41833 | ZNF571-AS1 | 15065 | uc002ogm.3 | chr19 | 38039851 | 38078248 | + | 300 | 100.0 | 0.13 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 41833 | ZNF571-AS1 | 15065 | uc002ogn.3 | chr19 | 38039851 | 38078248 | + | 300 | 100.0 | 0.13 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 41833 | ZNF571-AS1 | 15066 | uc002ogo.3 | chr19 | 38042273 | 38078248 | + | 300 | 100.0 | 0.11 | 1 | 100.0 | E1 (72.33), I1 (28), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 41833 | ZNF571-AS1 | 15066 | uc002ogp.3 | chr19 | 38042273 | 38078248 | + | 300 | 100.0 | 0.11 | 1 | 100.0 | E1 (72.33), I1 (28), E2 (0), I2 (0), E3 (0) | 0.0 |
| 41833 | ZNF540 | 15066 | uc002ogq.4 | chr19 | 38042273 | 38105079 | + | 300 | 100.0 | 0.11 | 0 | 100.0 | E1 (72.33), I1 (28), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41833 | chr19 | 38042621 | 38042915 | wgEncodeRegDnaseClusteredV2 | 98 | score:558, srow:577975 |
| 41833 | chr19 | 38041858 | 38042436 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:633, expCount:5, expNums:105,326,332,334,340, expScores:633,425,624,486,208, srow:2011647 |
| 41833 | chr19 | 38041926 | 38042528 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:547, expCount:1, expNums:30, expScores:363, srow:2011648 |
| 41833 | chr19 | 38042115 | 38042418 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:124, expCount:1, expNums:251, expScores:124, srow:2011649 |
| 41833 | chr19 | 38042120 | 38042375 | wgEncodeRegTfbsClusteredV3 | ATF1 | score:477, expCount:1, expNums:468, expScores:477, srow:2011650 |
| 41833 | chr19 | 38042127 | 38042430 | wgEncodeRegTfbsClusteredV3 | ATF3 | score:252, expCount:2, expNums:208,469, expScores:252,98, srow:2011652 |
| 41833 | chr19 | 38042576 | 38043029 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:74, expNums:0,2,5,9,14,16,18,20,24,35,37,39,42,44,213,262,290,463,493,597,601,603,604,605,607,618,621,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,657,658,659,660,661,662,664,665,668,669,670,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,687,688,689, expScores:130,360,113,143,187,309,279,584,566,337,589,527,360,432,202,289,201,384,474,258,396,769,190,967,682,372,457,616,298,113,461,432,484,725,842,295,815,685,782,1000,328,302,994,269,219,270,428,858,489,651,1000,886,862,226,364,129,354,905,1000,1000,496,606,507,527,300,127,614,388,231,371,787,865,519,186, srow:2011653 |
| 41833 | chr19 | 38042634 | 38042957 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:184, expCount:1, expNums:215, expScores:184, srow:2011654 |
| 41833 | chr19 | 38042639 | 38042948 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:350, expCount:1, expNums:472, expScores:350, srow:2011655 |
| 41833 | chr19 | 38040396 | 38042395 | cpgShore | — | values(x.gr)[overs$srow, ]:24556 |
| 41833 | chr19 | 38042396 | 38044395 | cpgShelf | — | values(x.gr)[overs$srow, ]:20481 |
- 11 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41833 | cellmeth_recounts | PrEC: 0, LNCaP: 20, DU145: 32 |  |
| 41833 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=28, Length=420, Event=Up, log2FC=Inf, padj=3.47401535442224e-08 |  |
| 41833 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 41833 | cellmeth_diffreps_PrECvsDU145 | A=0, B=20, Length=340, Event=Up, log2FC=Inf, padj=1.02756470669418e-05 |  |
| 41833 | cellmeth_diffreps_LNCaPvsDU145 | A=1.07, B=16.84, Length=200, Event=Up, log2FC=3.98, padj=0.0045445753436328 |  |
| 41833 | cellexp | id=ENSG00000171817, name=ZNF540, PrEC=11, str=46, LNCaP=113, str=73, DU145=36, str=35 |  |
| 41833 | cellexp | id=ENSG00000267470, name=ZNF571-AS1, PrEC=59, str=110, LNCaP=29, str=12, DU145=59, str=58 |  |
| 41833 | tcgameth | site:cg03975694, B=0.19, L=0.32, H=0.28 |  |
| 41833 | tcgaexp | gene=ZNF540, entrez=163255, pos=chr19:38042273-38105079(+), B=283, L=271, M=248, H=293 |  |
| 41833 | pubmed | gene=ZNF540, G=3, GP=0, GC=2, GM=2, GPM=0, GCM=2 |  |
| 41833 | pubmed | gene=ZNF571-AS1, G=410, GP=3, GC=49, GM=13, GPM=0, GCM=4 |  |