DMR Stats | |
---|---|
Position | chr19:39193101-39193250 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | ACTN4 (0bp away) |
ANODEV p-value | 3.86805765544e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41840 | ACTN4 | 15095 | uc002oja.2 | chr19 | 39138267 | 39221171 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
41840 | ACTN4 | 15095 | uc010egc.2 | chr19 | 39138267 | 39212518 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
41840 | ACTN4 | 15095 | uc021uug.1 | chr19 | 39138267 | 39221171 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
41840 | chr19 | 39192981 | 39193310 | wgEncodeRegDnaseClusteredV2 | 7 | score:428, srow:578804 |
41840 | chr19 | 39193086 | 39193104 | tfbsConsSites | V$ER_Q6 | score:815, zScore:2.33, srow:2477121 |
41840 | chr19 | 39193092 | 39193109 | tfbsConsSites | V$CMYB_01 | score:816, zScore:2.16, srow:2477122 |
41840 | chr19 | 39193095 | 39193112 | tfbsConsSites | V$AP4_01 | score:842, zScore:2.15, srow:2477123 |
41840 | chr19 | 39193097 | 39193108 | tfbsConsSites | V$MYOD_01 | score:890, zScore:1.75, srow:2477124 |
41840 | chr19 | 39193104 | 39193118 | tfbsConsSites | V$TAXCREB_02 | score:758, zScore:1.91, srow:2477125 |
41840 | chr19 | 39193075 | 39193109 | phastConsElements100way | lod=25 | score:312, srow:4276022 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
41840 | cellmeth_recounts | PrEC: 9, LNCaP: 6, DU145: 0 | |
41840 | cellmeth_diffreps_PrECvsDU145 | A=13, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000941091010072773 | |
41840 | cellexp | id=ENSG00000130402, name=ACTN4, PrEC=75704, str=45260, LNCaP=20446, str=17772, DU145=66546, str=73690 | |
41840 | tcgaexp | gene=ACTN4, entrez=81, pos=chr19:39138267-39221171(+), B=27414, L=20994, M=19698, H=21385 | |
41840 | pubmed | gene=ACTN4, G=212, GP=1, GC=55, GM=1, GPM=0, GCM=1 |