DMR 41843 chr19:39216301-39216500 (200bp)

DMR Stats
Positionchr19:39216301-39216500 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesACTN4 (0bp away)
ANODEV p-value0.00178624028258
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41843 ACTN4 15095 uc002oja.2 chr19 39138267 39221171 + 200 100.0 1.13 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (31.5), E17 (68.5), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) 0.0
41843 ACTN4 15095 uc021uug.1 chr19 39138267 39221171 + 200 100.0 0.36 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (31.5), E10 (68.5), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41843 chr19 39216206 39216435 wgEncodeRegDnaseClusteredV2 2 score:165, srow:578835
41843 chr19 39216471 39216569 wgEncodeRegTfbsClusteredV3 POLR2A score:218, expCount:1, expNums:62, expScores:218, srow:2015982
41843 chr19 39216401 39216422 tfbsConsSites V$HEN1_02 score:825, zScore:2.73, srow:2477239
41843 chr19 39216404 39216425 tfbsConsSites V$TCF11MAFG_01 score:747, zScore:1.76, srow:2477240
41843 chr19 39216407 39216416 tfbsConsSites V$AP4_Q6 score:1000, zScore:2.56, srow:2477241
41843 chr19 39216410 39216420 tfbsConsSites V$NFE2_01 score:921, zScore:2.7, srow:2477242
41843 chr19 39216411 39216421 tfbsConsSites V$AP1_Q4 score:924, zScore:2.16, srow:2477243
41843 chr19 39216411 39216438 tfbsConsSites V$PAX5_02 score:766, zScore:1.73, srow:2477244
41843 chr19 39216363 39216363 cosmic COSM474689 srow:594148
41843 chr19 39216373 39216373 cosmic COSM324633 srow:594149
41843 chr19 39216407 39216407 cosmic COSM158872 srow:594150
41843 chr19 39216360 39216368 phastConsElements100way lod=127 score:473, srow:4276249
41843 chr19 39216370 39216383 phastConsElements100way lod=161 score:496, srow:4276250
41843 chr19 39216385 39216398 phastConsElements100way lod=178 score:506, srow:4276251
41843 chr19 39216400 39216431 phastConsElements100way lod=370 score:579, srow:4276252
41843 chr19 39216433 39216443 phastConsElements100way lod=117 score:465, srow:4276253
41843 chr19 39216445 39216458 phastConsElements100way lod=142 score:484, srow:4276254
41843 chr19 39216460 39216503 phastConsElements100way lod=439 score:596, srow:4276255
41843 chr19 39215531 39217530 cpgShore — values(x.gr)[overs$srow, ]:24634
  • 19 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41843 cellmeth_recounts PrEC: 13, LNCaP: 8, DU145: 0
41843 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=500, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
41843 cellexp id=ENSG00000130402, name=ACTN4, PrEC=75704, str=45260, LNCaP=20446, str=17772, DU145=66546, str=73690
41843 tcgaexp gene=ACTN4, entrez=81, pos=chr19:39138267-39221171(+), B=27414, L=20994, M=19698, H=21385