DMR 41857 chr19:41932251-41932750 (500bp)

DMR Stats
Positionchr19:41932251-41932750 (View on UCSC)
Width500bp
Genomic Contextpromoter
Nearest GenesB3GNT8, BC128410 (0bp away)
ANODEV p-value0.00095508222472
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41857 B3GNT8 15190 uc002oqs.3 chr19 41931264 41934635 - 500 100.0 0.09 0 0.0 E1 (0), I1 (0), E2 (0), I2 (7.2), E3 (93) 2.6
41857 BC128410 15190 uc002oqt.1 chr19 41931316 41933463 - 500 100.0 0.26 1 0.0 E1 (0), I1 (100), E2 (0) 13.0
41857 B3GNT8 15190 uc021uuy.1 chr19 41931490 41932683 - 433 86.6 0.04 0 100.0 E1 (86.6) 47.8
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41857 chr19 41932006 41932410 wgEncodeRegDnaseClusteredV2 5 score:258, srow:580899
41857 chr19 41932541 41933555 wgEncodeRegDnaseClusteredV2 106 score:1000, srow:580900
41857 chr19 41932400 41932895 wgEncodeRegTfbsClusteredV3 HMGN3 score:123, expCount:1, expNums:501, expScores:123, srow:2027217
41857 chr19 41932254 41932269 tfbsConsSites V$E47_02 score:874, zScore:1.69, srow:2485090
41857 chr19 41932256 41932267 tfbsConsSites V$LMO2COM_01 score:931, zScore:1.88, srow:2485091
41857 chr19 41932299 41932312 tfbsConsSites V$NFKB_Q6 score:835, zScore:1.85, srow:2485092
41857 chr19 41932609 41932618 tfbsConsSites V$CDPCR1_01 score:839, zScore:1.74, srow:2485093
41857 chr19 41932631 41932644 tfbsConsSites V$P300_01 score:882, zScore:2.36, srow:2485094
41857 chr19 41932663 41932672 tfbsConsSites V$HMX1_01 score:827, zScore:1.96, srow:2485095
41857 chr19 41932672 41932690 tfbsConsSites V$PAX2_01 score:809, zScore:2.55, srow:2485096
41857 chr19 41932275 41932275 cosmic COSM439593 srow:598424
41857 chr19 41932338 41932338 cosmic COSM566261 srow:598425
41857 chr19 41932349 41932349 cosmic COSM712782 srow:598426
41857 chr19 41932579 41932579 cosmic COSM474785 srow:598427
41857 chr19 41932592 41932592 cosmic COSM1393975 srow:598428
41857 chr19 41932627 41932627 cosmic COSM1525193 srow:598429
41857 chr19 41932672 41932672 cosmic COSM712781 srow:598430
41857 chr19 41932680 41932680 cosmic COSM243148 srow:598431
41857 chr19 41932258 41932261 phastConsElements100way lod=20 score:290, srow:4291916
41857 chr19 41932268 41932269 phastConsElements100way lod=13 score:247, srow:4291917
41857 chr19 41932271 41932274 phastConsElements100way lod=26 score:316, srow:4291918
41857 chr19 41932289 41932296 phastConsElements100way lod=38 score:354, srow:4291919
41857 chr19 41932299 41932299 phastConsElements100way lod=13 score:247, srow:4291920
41857 chr19 41932301 41932306 phastConsElements100way lod=47 score:375, srow:4291921
41857 chr19 41932310 41932316 phastConsElements100way lod=40 score:359, srow:4291922
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  • 25 of 47 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41857 cellmeth_recounts PrEC: 8, LNCaP: 11, DU145: 20
41857 cellexp id=ENSG00000177191, name=B3GNT8, PrEC=318, str=443, LNCaP=1, str=1, DU145=4, str=2
41857 tcgaexp gene=B3GNT8, entrez=374907, pos=chr19:41931264-41934635(-), B=319, L=140, M=133, H=93
41857 pubmed gene=B3GNT8, G=8, GP=0, GC=5, GM=0, GPM=0, GCM=0
41857 pubmed gene=BCKDHA, G=39, GP=0, GC=1, GM=0, GPM=0, GCM=0