DMR 41950 chr19:56608101-56608300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:56608101-56608300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | ZNF787 (0bp away) |
| ANODEV p-value | 0.000888870604626 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41950 | ZNF787 | 15851 | uc010eth.1 | chr19 | 56598732 | 56632649 | - | 200 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 41950 | chr19 | 56608086 | 56608495 | wgEncodeRegDnaseClusteredV2 | 7 | score:428, srow:591365 |
| 41950 | chr19 | 56606792 | 56608791 | cpgShore | — | values(x.gr)[overs$srow, ]:26002 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 41950 | cellmeth_recounts | PrEC: 15, LNCaP: 9, DU145: 3 |  |
| 41950 | cellmeth_diffreps_PrECvsDU145 | A=22, B=2, Length=340, Event=Down, log2FC=-3.46, padj=0.000506195974236337 |  |
| 41950 | cellexp | id=ENSG00000142409, name=ZNF787, PrEC=2368, str=810, LNCaP=2673, str=1466, DU145=1781, str=1635 |  |
| 41950 | tcgameth | site:cg20677171, B=0.69, L=0.7, H=0.62 |  |
| 41950 | tcgaexp | gene=ZNF787, entrez=126208, pos=chr19:56598732-56632649(-), B=1473, L=1659, M=1702, H=1602 |  |
| 41950 | pubmed | gene=ZNF787, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |