DMR 41954 chr19:56728851-56729150 (300bp)

DMR Stats
Positionchr19:56728851-56729150 (View on UCSC)
Width300bp
Genomic Contextintergenic
Nearest GenesZSCAN5A (3528bp away)
ANODEV p-value0.00012206828634
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41954 chr19 56728326 56728935 wgEncodeRegDnaseClusteredV2 62 score:777, srow:591484
41954 chr19 56728966 56729315 wgEncodeRegDnaseClusteredV2 18 score:602, srow:591485
41954 chr19 56728613 56729102 wgEncodeRegTfbsClusteredV3 TAF1 score:204, expCount:1, expNums:157, expScores:204, srow:2081675
41954 chr19 56728682 56729351 wgEncodeRegTfbsClusteredV3 RBBP5 score:214, expCount:1, expNums:8, expScores:214, srow:2081676
41954 chr19 56729002 56729265 wgEncodeRegTfbsClusteredV3 PAX5 score:228, expCount:1, expNums:100, expScores:228, srow:2081677
41954 chr19 56728772 56728882 phastConsElements100way lod=459 score:600, srow:4359447
41954 chr19 56728891 56728906 phastConsElements100way lod=33 score:340, srow:4359448
41954 chr19 56728910 56728929 phastConsElements100way lod=41 score:361, srow:4359449
41954 chr19 56728939 56728955 phastConsElements100way lod=45 score:370, srow:4359450
41954 chr19 56728963 56728976 phastConsElements100way lod=55 score:390, srow:4359451
41954 chr19 56728980 56728982 phastConsElements100way lod=16 score:268, srow:4359452
41954 chr19 56728990 56728996 phastConsElements100way lod=21 score:295, srow:4359453
41954 chr19 56729002 56729003 phastConsElements100way lod=13 score:247, srow:4359454
41954 chr19 56729008 56729040 phastConsElements100way lod=107 score:456, srow:4359455
41954 chr19 56729043 56729062 phastConsElements100way lod=83 score:431, srow:4359456
41954 chr19 56729064 56729133 phastConsElements100way lod=341 score:571, srow:4359457
41954 chr19 56729135 56729153 phastConsElements100way lod=92 score:441, srow:4359458
41954 chr19 56728589 56729375 cpgIsland CpG: 84 length:787, cpgNum:84, gcNum:551, perCpg:21.3, perGc:70, obsExp:0.87, srow:14477
  • 18 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41954 cellmeth_recounts PrEC: 1, LNCaP: 107, DU145: 6
41954 cellmeth_diffreps_PrECvsLNCaP A=6, B=109, Length=720, Event=Up, log2FC=4.18, padj=0
41954 cellmeth_diffreps_LNCaPvsDU145 A=118.66, B=10.29, Length=740, Event=Down, log2FC=-3.53, padj=0
41954 cellexp id=ENSG00000242411, name=CTD-2086L14.1, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0