DMR 41960 chr19:57183051-57183250 (200bp)

DMR Stats
Positionchr19:57183051-57183250 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesZNF835 (0bp away)
ANODEV p-value0.00114960813068
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41960 ZNF835 15868 uc010ygn.2 chr19 57174020 57183123 - 73 36.5 0.03 0 100.0 E1 (36.5), I1 (0), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41960 chr19 57182986 57183335 wgEncodeRegDnaseClusteredV2 56 score:1000, srow:591708
41960 chr19 57182817 57183332 wgEncodeRegTfbsClusteredV3 POLR2A score:303, expCount:1, expNums:585, expScores:303, srow:2082295
41960 chr19 57183001 57183364 wgEncodeRegTfbsClusteredV3 CTCF score:242, expCount:6, expNums:598,661,674,676,683,687, expScores:160,109,120,128,130,242, srow:2082296
41960 chr19 57183069 57183360 wgEncodeRegTfbsClusteredV3 ZNF143 score:470, expCount:2, expNums:322,552, expScores:470,213, srow:2082297
41960 chr19 57182888 57183375 cpgIsland CpG: 46 length:488, cpgNum:46, gcNum:330, perCpg:18.9, perGc:67.6, obsExp:0.83, srow:14493
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41960 cellmeth_recounts PrEC: 0, LNCaP: 9, DU145: 5
41960 cellexp id=ENSG00000127903, name=ZNF835, PrEC=1, str=4, LNCaP=5, str=2, DU145=8, str=2
41960 tcgaexp gene=ZNF835, entrez=90485, pos=chr19:57174020-57183123(-), B=68, L=51, M=40, H=45