DMR 42147 chr20:60882201-60882350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr20:60882201-60882350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | ADRM1 (0bp away) |
| ANODEV p-value | 0.0140702970038 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42147 | ADRM1 | 18542 | uc002ycn.3 | chr20 | 60878027 | 60883918 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 42147 | ADRM1 | 18542 | uc002yco.3 | chr20 | 60878027 | 60883918 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42147 | chr20 | 60882226 | 60882895 | wgEncodeRegDnaseClusteredV2 | 22 | score:558, srow:735736 |
| 42147 | chr20 | 60876833 | 60883954 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:59, expNums:61,62,78,105,130,131,146,147,163,168,191,192,206,207,228,229,249,256,259,275,279,283,306,307,328,330,332,334,336,338,340,366,402,403,445,446,447,461,465,520,522,523,525,563,564,577,583,585,596,599,602,610,613,619,622,632,633,634,637, expScores:1000,213,463,441,327,592,263,524,341,348,248,319,155,299,359,339,159,421,277,263,216,116,315,178,1000,1000,925,794,1000,1000,990,184,749,291,80,194,209,182,447,161,173,207,216,489,527,318,397,253,307,538,261,194,164,103,192,296,256,221,122, srow:2564995 |
| 42147 | chr20 | 60879009 | 60882593 | cpgShore | — | values(x.gr)[overs$srow, ]:30463 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42147 | cellmeth_recounts | PrEC: 17, LNCaP: 8, DU145: 14 |  |
| 42147 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=5, Length=260, Event=Down, log2FC=-2.38, padj=0.00263389182989827 |  |
| 42147 | cellexp | id=ENSG00000130706, name=ADRM1, PrEC=5564, str=2581, LNCaP=3837, str=2754, DU145=3940, str=3889 |  |
| 42147 | tcgaexp | gene=ADRM1, entrez=11047, pos=chr20:60878027-60883918(+), B=4358, L=5073, M=4865, H=4822 |  |