DMR 42319 chr22:22300101-22300250 (150bp)
| DMR Stats | |
|---|---|
| Position | chr22:22300101-22300250 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | PPM1F (0bp away) |
| ANODEV p-value | 0.0480185091856 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42319 | PPM1F | 19167 | uc002zvp.2 | chr22 | 22273792 | 22307250 | - | 150 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (24), I2 (76), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 42319 | PPM1F | 19167 | uc002zvq.3 | chr22 | 22279249 | 22307250 | - | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (24), I2 (76), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42319 | chr22 | 22300240 | 22300241 | cosmic | COSM28416 | srow:782758 |
| 42319 | chr22 | 22300243 | 22300243 | cosmic | COSM384414 | srow:782759 |
| 42319 | chr22 | 22300210 | 22300220 | phastConsElements100way | lod=46 | score:373, srow:5552165 |
| 42319 | chr22 | 22300223 | 22300229 | phastConsElements100way | lod=38 | score:354, srow:5552166 |
| 42319 | chr22 | 22300237 | 22300243 | phastConsElements100way | lod=22 | score:300, srow:5552167 |
| 42319 | chr22 | 22300248 | 22300252 | phastConsElements100way | lod=39 | score:356, srow:5552168 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42319 | cellmeth_recounts | PrEC: 11, LNCaP: 1, DU145: 0 |  |
| 42319 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=1, Length=340, Event=Down, log2FC=-4.09, padj=0.00122106257116317 |  |
| 42319 | cellmeth_diffreps_PrECvsDU145 | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05 |  |
| 42319 | cellexp | id=ENSG00000100034, name=PPM1F, PrEC=4515, str=2275, LNCaP=1397, str=1236, DU145=2058, str=1502 |  |
| 42319 | tcgaexp | gene=PPM1F, entrez=9647, pos=chr22:22273792-22307250(-), B=2465, L=2131, M=1830, H=1800 |  |