DMR 42346 chr22:30690901-30691100 (200bp)
| DMR Stats | |
|---|---|
| Position | chr22:30690901-30691100 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | GATSL3, TBC1D10A (0bp away) |
| ANODEV p-value | 1.97818404886e-07 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42346 | GATSL3 | 19318 | uc003ahf.3 | chr22 | 30681107 | 30691832 | - | 200 | 100.0 | 0.05 | 1 | 0.0 | E1 (0), I1 (28.5), E2 (57.5), I2 (14.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 42346 | GATSL3 | 19318 | uc003ahg.3 | chr22 | 30681107 | 30695540 | - | 200 | 100.0 | 0.05 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (28.5), E3 (57.5), I3 (14.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 42346 | GATSL3 | 19318 | uc003ahh.3 | chr22 | 30681107 | 30695540 | - | 200 | 100.0 | 0.05 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (28.5), E3 (57.5), I3 (14.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 42346 | GATSL3 | 19318 | uc003ahi.3 | chr22 | 30681107 | 30695540 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (28.5), E3 (57.5), I3 (14.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 42346 | TBC1D10A | 19318 | uc003ahk.4 | chr22 | 30687979 | 30722955 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (28.5), E5 (57.5), I5 (14.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 42346 | GATSL3 | 19318 | uc010gvq.3 | chr22 | 30681107 | 30695540 | - | 200 | 100.0 | 1.05 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (28.5), E3 (57.5), I3 (14.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 42346 | TBC1D10A | 19318 | uc010gvu.3 | chr22 | 30687979 | 30722955 | - | 200 | 100.0 | 1.88 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (28.5), E5 (57.5), I5 (14.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42346 | chr22 | 30690726 | 30690930 | wgEncodeRegDnaseClusteredV2 | 2 | score:148, srow:764771 |
| 42346 | chr22 | 30690936 | 30690950 | tfbsConsSites | V$OCT1_02 | score:845, zScore:1.91, srow:3229311 |
| 42346 | chr22 | 30690949 | 30690978 | tfbsConsSites | V$HOX13_01 | score:713, zScore:1.82, srow:3229312 |
| 42346 | chr22 | 30690958 | 30690971 | tfbsConsSites | V$ROAZ_01 | score:778, zScore:2.26, srow:3229313 |
| 42346 | chr22 | 30690973 | 30690990 | tfbsConsSites | V$CEBP_C | score:803, zScore:1.64, srow:3229314 |
| 42346 | chr22 | 30691018 | 30691038 | tfbsConsSites | V$NRSF_01 | score:707, zScore:1.66, srow:3229315 |
| 42346 | chr22 | 30690970 | 30690970 | cosmic | COSM1415703 | srow:787665 |
| 42346 | chr22 | 30691008 | 30691008 | cosmic | COSM1535295 | srow:787666 |
| 42346 | chr22 | 30691010 | 30691010 | cosmic | COSM579991 | srow:787667 |
| 42346 | chr22 | 30691023 | 30691023 | cosmic | COSM1318778 | srow:787668 |
| 42346 | chr22 | 30691027 | 30691027 | cosmic | COSM1267448 | srow:787669 |
| 42346 | chr22 | 30691028 | 30691028 | cosmic | COSM1682194 | srow:787670 |
| 42346 | chr22 | 30690927 | 30690932 | phastConsElements100way | lod=86 | score:434, srow:5584358 |
| 42346 | chr22 | 30690934 | 30690935 | phastConsElements100way | lod=30 | score:330, srow:5584359 |
| 42346 | chr22 | 30690937 | 30690953 | phastConsElements100way | lod=248 | score:539, srow:5584360 |
| 42346 | chr22 | 30690955 | 30690956 | phastConsElements100way | lod=28 | score:323, srow:5584361 |
| 42346 | chr22 | 30690958 | 30690959 | phastConsElements100way | lod=37 | score:351, srow:5584362 |
| 42346 | chr22 | 30690961 | 30690962 | phastConsElements100way | lod=37 | score:351, srow:5584363 |
| 42346 | chr22 | 30690964 | 30690968 | phastConsElements100way | lod=65 | score:407, srow:5584364 |
| 42346 | chr22 | 30690970 | 30690995 | phastConsElements100way | lod=349 | score:573, srow:5584365 |
| 42346 | chr22 | 30690997 | 30690998 | phastConsElements100way | lod=45 | score:370, srow:5584366 |
| 42346 | chr22 | 30691000 | 30691004 | phastConsElements100way | lod=62 | score:402, srow:5584367 |
| 42346 | chr22 | 30691006 | 30691007 | phastConsElements100way | lod=30 | score:330, srow:5584368 |
| 42346 | chr22 | 30691009 | 30691031 | phastConsElements100way | lod=267 | score:547, srow:5584369 |
| 42346 | chr22 | 30691033 | 30691047 | phastConsElements100way | lod=198 | score:517, srow:5584370 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42346 | cellmeth_recounts | PrEC: 27, LNCaP: 8, DU145: 0 |  |
| 42346 | cellmeth_diffreps_PrECvsLNCaP | A=40, B=6, Length=380, Event=Down, log2FC=-2.74, padj=6.50516883502584e-06 |  |
| 42346 | cellmeth_diffreps_PrECvsDU145 | A=41, B=0, Length=420, Event=Down, log2FC=-Inf, padj=6.75411353572442e-12 |  |
| 42346 | cellexp | id=ENSG00000099992, name=TBC1D10A, PrEC=751, str=1104, LNCaP=522, str=330, DU145=314, str=217 |  |
| 42346 | cellexp | id=ENSG00000248751, name=RP1-130H16.18, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 42346 | tcgaexp | gene=TBC1D10A, entrez=83874, pos=chr22:30687979-30722955(-), B=2096, L=1705, M=1576, H=1490 |  |
| 42346 | tcgaexp | gene=GATSL3, entrez=652968, pos=chr22:30681107-30695540(-), B=1099, L=939, M=972, H=947 |  |
| 42346 | pubmed | gene=TBC1D10A, G=11, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |