DMR 42404 chr22:40390051-40390250 (200bp)

DMR Stats
Positionchr22:40390051-40390250 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesFAM83F (702bp away)
ANODEV p-value7.47447559781e-06
FrequenciesBenign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
42404 chr22 40389966 40390495 wgEncodeRegDnaseClusteredV2 33 score:1000, srow:771987
42404 chr22 40389856 40391212 wgEncodeRegTfbsClusteredV3 POLR2A score:618, expCount:5, expNums:163,228,362,524,583, expScores:308,207,189,192,380, srow:2693018
42404 chr22 40389926 40390394 wgEncodeRegTfbsClusteredV3 MYC score:229, expCount:3, expNums:487,488,489, expScores:229,151,171, srow:2693019
42404 chr22 40389942 40390457 wgEncodeRegTfbsClusteredV3 GATA1 score:1000, expCount:1, expNums:582, expScores:436, srow:2693020
42404 chr22 40389960 40390315 wgEncodeRegTfbsClusteredV3 MAX score:554, expCount:2, expNums:223,511, expScores:554,224, srow:2693021
42404 chr22 40389990 40390359 wgEncodeRegTfbsClusteredV3 RUNX3 score:259, expCount:1, expNums:109, expScores:259, srow:2693022
42404 chr22 40389996 40390319 wgEncodeRegTfbsClusteredV3 E2F6 score:249, expCount:1, expNums:215, expScores:249, srow:2693023
42404 chr22 40390087 40390256 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:1, expNums:472, expScores:1000, srow:2693024
42404 chr22 40390094 40392000 wgEncodeRegTfbsClusteredV3 EZH2 score:402, expCount:3, expNums:21,38,43, expScores:345,236,271, srow:2693025
42404 chr22 40390095 40390390 wgEncodeRegTfbsClusteredV3 RCOR1 score:239, expCount:1, expNums:492, expScores:239, srow:2693026
42404 chr22 40390099 40390378 wgEncodeRegTfbsClusteredV3 JUND score:191, expCount:1, expNums:507, expScores:191, srow:2693027
42404 chr22 40390102 40390357 wgEncodeRegTfbsClusteredV3 GATA2 score:231, expCount:1, expNums:221, expScores:231, srow:2693028
42404 chr22 40390157 40390400 wgEncodeRegTfbsClusteredV3 EGR1 score:269, expCount:1, expNums:216, expScores:269, srow:2693029
42404 chr22 40390169 40390285 wgEncodeRegTfbsClusteredV3 TEAD4 score:738, expCount:1, expNums:240, expScores:738, srow:2693030
42404 chr22 40390189 40390275 wgEncodeRegTfbsClusteredV3 TAL1 score:770, expCount:1, expNums:542, expScores:770, srow:2693031
42404 chr22 40390067 40390075 tfbsConsSites V$EVI1_06 score:877, zScore:2.01, srow:3249679
42404 chr22 40390069 40390082 tfbsConsSites V$FOXJ2_02 score:853, zScore:1.84, srow:3249680
42404 chr22 40390074 40390085 tfbsConsSites V$OCT1_07 score:863, zScore:1.82, srow:3249681
42404 chr22 40390075 40390084 tfbsConsSites V$POU3F2_02 score:932, zScore:3.02, srow:3249682
42404 chr22 40390078 40390092 tfbsConsSites V$HNF1_01 score:797, zScore:1.65, srow:3249683
42404 chr22 40390082 40390092 tfbsConsSites V$AP1_Q4 score:911, zScore:1.93, srow:3249684
42404 chr22 40390096 40390107 tfbsConsSites V$CDC5_01 score:818, zScore:1.66, srow:3249685
42404 chr22 40390107 40390128 tfbsConsSites V$TCF11MAFG_01 score:745, zScore:1.73, srow:3249686
42404 chr22 40390112 40390120 tfbsConsSites V$AREB6_04 score:951, zScore:1.7, srow:3249687
42404 chr22 40390201 40390216 tfbsConsSites V$BRN2_01 score:842, zScore:2.5, srow:3249688
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Omics Overlaps

Dmrid Omic Set Data Plot
42404 cellmeth_recounts PrEC: 36, LNCaP: 159, DU145: 10
42404 cellmeth_diffreps_PrECvsLNCaP A=110, B=331, Length=1160, Event=Up, log2FC=1.59, padj=0
42404 cellmeth_diffreps_PrECvsDU145 A=110, B=8, Length=740, Event=Down, log2FC=-3.78, padj=0
42404 cellmeth_diffreps_LNCaPvsDU145 A=353.85, B=7.48, Length=1220, Event=Down, log2FC=-5.56, padj=0
42404 pubmed gene=FAM83F, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0