DMR 42439 chr22:44442701-44442900 (200bp)

DMR Stats
Positionchr22:44442701-44442900 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesPARVB (0bp away)
ANODEV p-value0.00136214502936
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
42439 PARVB 19628 uc003bem.3 chr22 44395091 44565112 + 200 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
42439 PARVB 19628 uc003ben.3 chr22 44420157 44565112 + 200 100.0 0.51 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
42439 PARVB 19628 uc010gzn.3 chr22 44422184 44565112 + 200 100.0 0.31 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
42439 chr22 44442501 44442955 wgEncodeRegDnaseClusteredV2 17 score:746, srow:775338
42439 chr22 44442198 44443032 wgEncodeRegTfbsClusteredV3 GATA1 score:1000, expCount:3, expNums:497,582,584, expScores:124,1000,223, srow:2704434
42439 chr22 44442208 44443121 wgEncodeRegTfbsClusteredV3 POLR2A score:518, expCount:4, expNums:32,228,524,583, expScores:245,518,180,460, srow:2704435
42439 chr22 44442304 44442819 wgEncodeRegTfbsClusteredV3 PML score:430, expCount:1, expNums:227, expScores:430, srow:2704436
42439 chr22 44442305 44443054 wgEncodeRegTfbsClusteredV3 GATA2 score:630, expCount:3, expNums:221,498,591, expScores:630,135,294, srow:2704437
42439 chr22 44442362 44442761 wgEncodeRegTfbsClusteredV3 NR2F2 score:452, expCount:1, expNums:225, expScores:452, srow:2704438
42439 chr22 44442368 44442791 wgEncodeRegTfbsClusteredV3 MYC score:194, expCount:1, expNums:488, expScores:194, srow:2704439
42439 chr22 44442370 44442785 wgEncodeRegTfbsClusteredV3 TRIM28 score:283, expCount:1, expNums:242, expScores:283, srow:2704440
42439 chr22 44442373 44442722 wgEncodeRegTfbsClusteredV3 STAT5A score:549, expCount:1, expNums:237, expScores:549, srow:2704442
42439 chr22 44442386 44442745 wgEncodeRegTfbsClusteredV3 IRF1 score:115, expCount:1, expNums:506, expScores:115, srow:2704443
42439 chr22 44442391 44442853 wgEncodeRegTfbsClusteredV3 JUND score:306, expCount:2, expNums:507,594, expScores:306,278, srow:2704444
42439 chr22 44442402 44442761 wgEncodeRegTfbsClusteredV3 ARID3A score:162, expCount:1, expNums:467, expScores:162, srow:2704445
42439 chr22 44442404 44442859 wgEncodeRegTfbsClusteredV3 CCNT2 score:264, expCount:1, expNums:476, expScores:264, srow:2704446
42439 chr22 44442405 44442720 wgEncodeRegTfbsClusteredV3 EP300 score:457, expCount:1, expNums:519, expScores:457, srow:2704447
42439 chr22 44442408 44442743 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:246, expCount:1, expNums:544, expScores:246, srow:2704448
42439 chr22 44442420 44442708 wgEncodeRegTfbsClusteredV3 TAL1 score:1000, expCount:1, expNums:542, expScores:1000, srow:2704449
42439 chr22 44442432 44442939 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:1, expNums:240, expScores:299, srow:2704450
42439 chr22 44442589 44442958 wgEncodeRegTfbsClusteredV3 MAZ score:193, expCount:1, expNums:512, expScores:193, srow:2704451
42439 chr22 44442594 44442889 wgEncodeRegTfbsClusteredV3 RCOR1 score:372, expCount:1, expNums:492, expScores:372, srow:2704452
42439 chr22 44442600 44442909 wgEncodeRegTfbsClusteredV3 BHLHE40 score:307, expCount:1, expNums:472, expScores:307, srow:2704453
42439 chr22 44442647 44443050 wgEncodeRegTfbsClusteredV3 ZBTB7A score:153, expCount:1, expNums:247, expScores:153, srow:2704454
42439 chr22 44442688 44442908 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:1, expNums:216, expScores:1000, srow:2704455
  • 22 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
42439 cellmeth_recounts PrEC: 9, LNCaP: 0, DU145: 0
42439 cellmeth_diffreps_PrECvsLNCaP A=14, B=0, Length=300, Event=Down, log2FC=-Inf, padj=0.000432533284720616
42439 cellmeth_diffreps_PrECvsDU145 A=17, B=0, Length=380, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05
42439 cellexp id=ENSG00000188677, name=PARVB, PrEC=1453, str=569, LNCaP=3270, str=2595, DU145=1616, str=1671
42439 tcgaexp gene=PARVB, entrez=29780, pos=chr22:44395091-44565112(+), B=901, L=1534, M=1288, H=1136