DMR 42495 chr22:50942951-50943100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr22:50942951-50943100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | LMF2 (0bp away) |
| ANODEV p-value | 0.019068042704 |
| Frequencies | Benign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42495 | LMF2 | 19710 | uc003blo.2 | chr22 | 50941376 | 50946135 | - | 150 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (75.33), I11 (24.67), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 42495 | LMF2 | 19710 | uc003blp.2 | chr22 | 50941376 | 50946135 | - | 150 | 100.0 | 3.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (75.33), I11 (24.67), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42495 | chr22 | 50942961 | 50943175 | wgEncodeRegDnaseClusteredV2 | 6 | score:597, srow:781672 |
| 42495 | chr22 | 50942978 | 50942995 | tfbsConsSites | V$AP4_01 | score:814, zScore:1.71, srow:3270034 |
| 42495 | chr22 | 50942981 | 50942993 | tfbsConsSites | V$AREB6_01 | score:928, zScore:2.47, srow:3270035 |
| 42495 | chr22 | 50942986 | 50943014 | tfbsConsSites | V$MYOGNF1_01 | score:765, zScore:2.18, srow:3270036 |
| 42495 | chr22 | 50942987 | 50943005 | tfbsConsSites | V$HNF4_01 | score:824, zScore:1.98, srow:3270037 |
| 42495 | chr22 | 50943066 | 50943071 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:3270038 |
| 42495 | chr22 | 50943044 | 50943044 | cosmic | COSM1035483 | srow:800049 |
| 42495 | chr22 | 50942983 | 50942988 | phastConsElements100way | lod=51 | score:383, srow:5651158 |
| 42495 | chr22 | 50942990 | 50942991 | phastConsElements100way | lod=18 | score:280, srow:5651159 |
| 42495 | chr22 | 50942996 | 50943015 | phastConsElements100way | lod=160 | score:496, srow:5651160 |
| 42495 | chr22 | 50943017 | 50943033 | phastConsElements100way | lod=149 | score:489, srow:5651161 |
| 42495 | chr22 | 50943035 | 50943042 | phastConsElements100way | lod=79 | score:426, srow:5651162 |
| 42495 | chr22 | 50943044 | 50943048 | phastConsElements100way | lod=45 | score:370, srow:5651163 |
| 42495 | chr22 | 50943053 | 50943060 | phastConsElements100way | lod=60 | score:399, srow:5651164 |
| 42495 | chr22 | 50943062 | 50943081 | phastConsElements100way | lod=213 | score:524, srow:5651165 |
| 42495 | chr22 | 50943083 | 50943087 | phastConsElements100way | lod=37 | score:351, srow:5651166 |
| 42495 | chr22 | 50943089 | 50943096 | phastConsElements100way | lod=99 | score:448, srow:5651167 |
| 42495 | chr22 | 50943098 | 50943099 | phastConsElements100way | lod=38 | score:354, srow:5651168 |
| 42495 | chr22 | 50942355 | 50944354 | cpgShore | — | values(x.gr)[overs$srow, ]:32740 |
- 19 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42495 | cellmeth_recounts | PrEC: 0, LNCaP: 28, DU145: 1 |  |
| 42495 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=80, Length=640, Event=Up, log2FC=4.32, padj=0 |  |
| 42495 | cellmeth_diffreps_LNCaPvsDU145 | A=93.01, B=6.55, Length=700, Event=Down, log2FC=-3.83, padj=0 |  |
| 42495 | cellexp | id=ENSG00000100258, name=LMF2, PrEC=5758, str=8849, LNCaP=4626, str=2609, DU145=3603, str=4345 |  |
| 42495 | tcgaexp | gene=LMF2, entrez=91289, pos=chr22:50941376-50946135(-), B=4602, L=5707, M=5104, H=4576 |  |