DMR 42497 chr22:51063551-51063700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr22:51063551-51063700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | ARSA (0bp away) |
| ANODEV p-value | 0.0012886704655 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42497 | ARSA | 19722 | uc003bmz.5 | chr22 | 51061182 | 51066601 | - | 150 | 100.0 | 35.37 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 0.0 |
| 42497 | ARSA | 19722 | uc003bna.4 | chr22 | 51061182 | 51066601 | - | 150 | 100.0 | 5.0 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 0.0 |
| 42497 | ARSA | 19722 | uc021wsd.1 | chr22 | 51061182 | 51066601 | - | 150 | 100.0 | 1.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 0.0 |
| 42497 | ARSA | 19722 | uc021wse.1 | chr22 | 51061182 | 51066601 | - | 150 | 100.0 | 1.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 0.0 |
| 42497 | ARSA | 19722 | uc021wsf.1 | chr22 | 51061182 | 51066601 | - | 150 | 100.0 | 6.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42497 | chr22 | 51063609 | 51063622 | tfbsConsSites | V$P300_01 | score:865, zScore:2.07, srow:3270579 |
| 42497 | chr22 | 51063611 | 51063623 | tfbsConsSites | V$CHOP_01 | score:887, zScore:2.92, srow:3270580 |
| 42497 | chr22 | 51063617 | 51063637 | tfbsConsSites | V$NRSF_01 | score:736, zScore:2.14, srow:3270581 |
| 42497 | chr22 | 51063644 | 51063671 | tfbsConsSites | V$PAX5_01 | score:770, zScore:1.8, srow:3270582 |
| 42497 | chr22 | 51063669 | 51063679 | tfbsConsSites | V$CP2_01 | score:912, zScore:2.29, srow:3270583 |
| 42497 | chr22 | 51063669 | 51063688 | tfbsConsSites | V$PPARA_01 | score:766, zScore:2.27, srow:3270584 |
| 42497 | chr22 | 51063672 | 51063692 | tfbsConsSites | V$PPARG_01 | score:834, zScore:3.59, srow:3270585 |
| 42497 | chr22 | 51063675 | 51063688 | tfbsConsSites | V$COUP_01 | score:920, zScore:3.13, srow:3270586 |
| 42497 | chr22 | 51063582 | 51063582 | cosmic | COSM36717 | srow:800418 |
| 42497 | chr22 | 51063680 | 51063680 | cosmic | COSM1183679 | srow:800419 |
| 42497 | chr22 | 51063589 | 51063593 | phastConsElements100way | lod=51 | score:383, srow:5652530 |
| 42497 | chr22 | 51063597 | 51063602 | phastConsElements100way | lod=76 | score:422, srow:5652531 |
| 42497 | chr22 | 51063607 | 51063610 | phastConsElements100way | lod=42 | score:363, srow:5652532 |
| 42497 | chr22 | 51063613 | 51063614 | phastConsElements100way | lod=38 | score:354, srow:5652533 |
| 42497 | chr22 | 51063619 | 51063621 | phastConsElements100way | lod=29 | score:327, srow:5652534 |
| 42497 | chr22 | 51063625 | 51063626 | phastConsElements100way | lod=31 | score:333, srow:5652535 |
| 42497 | chr22 | 51063631 | 51063644 | phastConsElements100way | lod=133 | score:478, srow:5652536 |
| 42497 | chr22 | 51063649 | 51063653 | phastConsElements100way | lod=68 | score:411, srow:5652537 |
| 42497 | chr22 | 51063658 | 51063659 | phastConsElements100way | lod=22 | score:300, srow:5652538 |
| 42497 | chr22 | 51063667 | 51063688 | phastConsElements100way | lod=130 | score:475, srow:5652539 |
| 42497 | chr22 | 51063697 | 51063701 | phastConsElements100way | lod=45 | score:370, srow:5652540 |
| 42497 | chr22 | 51062108 | 51064107 | cpgShelf | — | values(x.gr)[overs$srow, ]:27375 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42497 | cellmeth_recounts | PrEC: 12, LNCaP: 19, DU145: 3 |  |
| 42497 | cellmeth_diffreps_PrECvsDU145 | A=18, B=1, Length=260, Event=Down, log2FC=-4.17, padj=0.000790397688779211 |  |
| 42497 | cellmeth_diffreps_LNCaPvsDU145 | A=16.04, B=0.94, Length=220, Event=Down, log2FC=-4.1, padj=0.00548151537451132 |  |
| 42497 | cellexp | id=ENSG00000100299, name=ARSA, PrEC=2193, str=6885, LNCaP=1638, str=677, DU145=1263, str=868 |  |
| 42497 | tcgameth | site:cg02405329, B=0.82, L=0.82, H=0.82 |  |
| 42497 | tcgaexp | gene=ARSA, entrez=410, pos=chr22:51061182-51066601(-), B=2952, L=4045, M=3803, H=2800 |  |