DMR 42526 chrX:43828651-43828850 (200bp)
| DMR Stats | |
|---|---|
| Position | chrX:43828651-43828850 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | NDP (0bp away) |
| ANODEV p-value | 0.000160036160103 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42526 | NDP | 30783 | uc004dga.3 | chrX | 43808024 | 43832921 | - | 200 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42526 | chrX | 43828786 | 43829215 | wgEncodeRegDnaseClusteredV2 | 19 | score:396, srow:1262586 |
| 42526 | chrX | 43828685 | 43828690 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:5616611 |
| 42526 | chrX | 43828700 | 43828720 | tfbsConsSites | V$PPARG_01 | score:734, zScore:1.81, srow:5616612 |
| 42526 | chrX | 43828701 | 43828719 | tfbsConsSites | V$HNF4_01 | score:851, zScore:2.49, srow:5616613 |
| 42526 | chrX | 43828721 | 43828733 | tfbsConsSites | V$IK1_01 | score:938, zScore:3.24, srow:5616614 |
| 42526 | chrX | 43828722 | 43828733 | tfbsConsSites | V$IK2_01 | score:949, zScore:2, srow:5616615 |
| 42526 | chrX | 43828766 | 43828784 | tfbsConsSites | V$ER_Q6 | score:801, zScore:2.09, srow:5616616 |
| 42526 | chrX | 43828844 | 43828857 | tfbsConsSites | V$MYCMAX_01 | score:875, zScore:2.87, srow:5616617 |
| 42526 | chrX | 43828846 | 43828855 | tfbsConsSites | V$USF_Q6 | score:977, zScore:2.97, srow:5616618 |
| 42526 | chrX | 43828653 | 43828664 | phastConsElements100way | lod=41 | score:361, srow:9719391 |
| 42526 | chrX | 43828679 | 43828716 | phastConsElements100way | lod=110 | score:459, srow:9719392 |
| 42526 | chrX | 43828725 | 43828733 | phastConsElements100way | lod=32 | score:337, srow:9719393 |
| 42526 | chrX | 43828737 | 43828756 | phastConsElements100way | lod=21 | score:295, srow:9719394 |
| 42526 | chrX | 43828759 | 43828764 | phastConsElements100way | lod=33 | score:340, srow:9719395 |
| 42526 | chrX | 43828769 | 43828810 | phastConsElements100way | lod=173 | score:504, srow:9719396 |
| 42526 | chrX | 43828829 | 43828842 | phastConsElements100way | lod=61 | score:400, srow:9719397 |
| 42526 | chrX | 43828845 | 43828859 | phastConsElements100way | lod=28 | score:323, srow:9719398 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42526 | cellmeth_recounts | PrEC: 2, LNCaP: 1, DU145: 0 |  |
| 42526 | cellexp | id=ENSG00000124479, name=NDP, PrEC=1, str=7, LNCaP=5, str=11, DU145=0, str=0 |  |
| 42526 | cellexp | id=ENSG00000236276, name=NDP-AS1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 42526 | tcgaexp | gene=NDP, entrez=4693, pos=chrX:43808024-43832921(-), B=479, L=376, M=160, H=141 |  |
| 42526 | pubmed | gene=NDP, G=1223, GP=12, GC=220, GM=4, GPM=1, GCM=2 |  |