DMR 43 chr1:3583901-3584050 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3583901-3584050 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | TP73 (0bp away) |
| ANODEV p-value | 0.011963347055 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43 | TP73 | 124 | uc001akp.3 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 1.45 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 43 | TP73 | 124 | uc021ofb.1 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 2.53 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 43 | TP73 | 124 | uc021ofc.1 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 1.45 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 43 | TP73 | 124 | uc021ofd.1 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 43 | TP73 | 124 | uc021ofe.1 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 2.11 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 43 | TP73 | 124 | uc021off.1 | chr1 | 3569129 | 3652765 | + | 150 | 100.0 | 1.19 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 43 | chr1 | 3583741 | 3584130 | wgEncodeRegDnaseClusteredV2 | 12 | score:689, srow:2848 |
| 43 | chr1 | 3583704 | 3584203 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:156, expCount:1, expNums:602, expScores:156, srow:10079 |
| 43 | chr1 | 3583838 | 3584137 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:771, expCount:1, expNums:109, expScores:771, srow:10080 |
| 43 | chr1 | 3583843 | 3584206 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:217, expCount:1, expNums:88, expScores:217, srow:10081 |
| 43 | chr1 | 3583879 | 3584158 | wgEncodeRegTfbsClusteredV3 | BCL11A | score:139, expCount:1, expNums:82, expScores:139, srow:10082 |
| 43 | chr1 | 3583891 | 3584150 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:143, expCount:1, expNums:116, expScores:143, srow:10083 |
| 43 | chr1 | 3583970 | 3584299 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:450, expCount:1, expNums:284, expScores:450, srow:10084 |
| 43 | chr1 | 3583984 | 3584105 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:403, expCount:1, expNums:86, expScores:403, srow:10085 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 43 | cellmeth_recounts | PrEC: 35, LNCaP: 10, DU145: 5 |  |
| 43 | cellmeth_diffreps_PrECvsLNCaP | A=54, B=8, Length=400, Event=Down, log2FC=-2.75, padj=4.56840077572732e-08 |  |
| 43 | cellmeth_diffreps_PrECvsDU145 | A=54, B=4, Length=400, Event=Down, log2FC=-3.75, padj=1.03251934852427e-10 |  |
| 43 | cellexp | id=ENSG00000078900, name=TP73, PrEC=67, str=27, LNCaP=532, str=348, DU145=65, str=27 |  |
| 43 | cellexp | id=ENSG00000227589, name=RP5-1092A11.5, PrEC=0, str=0, LNCaP=20, str=17, DU145=1, str=0 |  |
| 43 | tcgaexp | gene=TP73, entrez=7161, pos=chr1:3569129-3652765(+), B=296, L=155, M=180, H=163 |  |
| 43 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 43 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |