DMR 4343 chr8:179101-179300 (200bp)

DMR Stats
Positionchr8:179101-179300 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesRPL23AP53 (0bp away)
ANODEV p-value0.000972901652102
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
4343 RPL23AP53 28079 uc003woq.4 chr8 158345 182318 - 200 100.0 0.41 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
4343 RPL23AP53 28079 uc010lra.3 chr8 158345 182318 - 200 100.0 0.06 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
4343 RPL23AP53 28079 uc010lrb.4 chr8 158345 182318 - 200 100.0 0.11 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
4343 chr8 179106 179375 wgEncodeRegDnaseClusteredV2 4 score:157, srow:1137114
4343 chr8 179002 179288 cpgIsland CpG: 25 length:287, cpgNum:25, gcNum:167, perCpg:17.4, perGc:58.2, obsExp:1.1, srow:25248
4343 chr8 179289 181838 cpgShore — values(x.gr)[overs$srow, ]:45691
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
4343 cellmeth_recounts PrEC: 144, LNCaP: 23, DU145: 4
4343 cellmeth_diffreps_PrECvsLNCaP A=366, B=46, Length=960, Event=Down, log2FC=-2.99, padj=0
4343 cellmeth_diffreps_PrECvsDU145 A=367, B=28, Length=980, Event=Down, log2FC=-3.71, padj=0
4343 cellexp id=ENSG00000223508, name=RPL23AP53, PrEC=74, str=62, LNCaP=59, str=92, DU145=74, str=82
4343 tcgameth site:cg13955550, B=0.98, L=0.98, H=0.97
4343 tcgameth site:cg17561243, B=0.99, L=0.99, H=0.99
4343 tcgameth site:cg20651456, B=0.91, L=0.91, H=0.88
4343 tcgaexp gene=RPL23AP53, entrez=644128, pos=chr8:158345-182318(-), B=404, L=394, M=390, H=382