DMR 439 chr1:120907401-120907550 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:120907401-120907550 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | HIST2H2BA (0bp away) |
| ANODEV p-value | 0.0237800668765 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 439 | HIST2H2BA | 1426 | uc001eio.2 | chr1 | 120906034 | 120914842 | + | 150 | 100.0 | 0.03 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 439 | chr1 | 120906397 | 120908396 | cpgShore | — | values(x.gr)[overs$srow, ]:2771 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 439 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 439 | cellexp | id=ENSG00000223345, name=HIST2H2BA, PrEC=24, str=16, LNCaP=13, str=6, DU145=0, str=0 |  |
| 439 | cellexp | id=ENSG00000234998, name=RP11-439A17.10, PrEC=12, str=7, LNCaP=2, str=1, DU145=0, str=0 |  |
| 439 | tcgaexp | gene=HIST2H2BA, entrez=337875, pos=chr1:120906034-120914842(+), B=118, L=96, M=118, H=153 |  |
| 439 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |