DMR 45 chr1:3680251-3680400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3680251-3680400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | CCDC27 (0bp away) |
| ANODEV p-value | 0.0257508015859 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45 | CCDC27 | 126 | uc001akv.2 | chr1 | 3668965 | 3688209 | + | 150 | 100.0 | 2.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (12.67), E8 (87.33), I8 (0.67), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 45 | chr1 | 3680121 | 3680390 | wgEncodeRegDnaseClusteredV2 | 2 | score:170, srow:2955 |
| 45 | chr1 | 3679554 | 3680483 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:321, expCount:2, expNums:368,553, expScores:321,159, srow:10458 |
| 45 | chr1 | 3680299 | 3680313 | tfbsConsSites | V$STAT5A_01 | score:878, zScore:2.05, srow:7062 |
| 45 | chr1 | 3680299 | 3680313 | tfbsConsSites | V$STAT5B_01 | score:870, zScore:2.17, srow:7063 |
| 45 | chr1 | 3680306 | 3680327 | tfbsConsSites | V$HEN1_01 | score:808, zScore:2.2, srow:7064 |
| 45 | chr1 | 3680312 | 3680321 | tfbsConsSites | V$AP4_Q5 | score:960, zScore:1.9, srow:7065 |
| 45 | chr1 | 3680269 | 3680269 | cosmic | COSM108635 | srow:2557 |
| 45 | chr1 | 3680299 | 3680299 | cosmic | COSM1686912 | srow:2558 |
| 45 | chr1 | 3680308 | 3680308 | cosmic | COSM908874 | srow:2559 |
| 45 | chr1 | 3680321 | 3680321 | cosmic | COSM175816 | srow:2560 |
| 45 | chr1 | 3680334 | 3680334 | cosmic | COSM243524 | srow:2561 |
| 45 | chr1 | 3680341 | 3680341 | cosmic | COSM345044 | srow:2562 |
| 45 | chr1 | 3680345 | 3680345 | cosmic | COSM1342324 | srow:2563 |
| 45 | chr1 | 3680346 | 3680346 | cosmic | COSM271153 | srow:2564 |
| 45 | chr1 | 3680356 | 3680356 | cosmic | COSM680896 | srow:2565 |
| 45 | chr1 | 3680369 | 3680369 | cosmic | COSM908875 | srow:2566 |
| 45 | chr1 | 3680268 | 3680270 | phastConsElements100way | lod=25 | score:312, srow:16249 |
| 45 | chr1 | 3680305 | 3680309 | phastConsElements100way | lod=12 | score:240, srow:16250 |
| 45 | chr1 | 3680314 | 3680319 | phastConsElements100way | lod=18 | score:280, srow:16251 |
| 45 | chr1 | 3680335 | 3680339 | phastConsElements100way | lod=14 | score:255, srow:16252 |
| 45 | chr1 | 3680341 | 3680343 | phastConsElements100way | lod=13 | score:247, srow:16253 |
| 45 | chr1 | 3680347 | 3680360 | phastConsElements100way | lod=40 | score:359, srow:16254 |
| 45 | chr1 | 3680365 | 3680369 | phastConsElements100way | lod=24 | score:308, srow:16255 |
| 45 | chr1 | 3680377 | 3680381 | phastConsElements100way | lod=21 | score:295, srow:16256 |
| 45 | chr1 | 3680383 | 3680403 | phastConsElements100way | lod=87 | score:436, srow:16257 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 45 | cellmeth_recounts | PrEC: 98, LNCaP: 8, DU145: 4 |  |
| 45 | cellmeth_diffreps_PrECvsLNCaP | A=183, B=7, Length=600, Event=Down, log2FC=-4.71, padj=0 |  |
| 45 | cellmeth_diffreps_PrECvsDU145 | A=184, B=4, Length=620, Event=Down, log2FC=-5.52, padj=0 |  |
| 45 | cellexp | id=ENSG00000162592, name=CCDC27, PrEC=2, str=0, LNCaP=28, str=18, DU145=21, str=1 |  |
| 45 | tcgameth | site:cg22942897, B=0.67, L=0.75, H=0.7 |  |
| 45 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 45 | tcgaexp | gene=CCDC27, entrez=148870, pos=chr1:3668965-3688209(+), B=3, L=1, M=1, H=1 |  |
| 45 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |