DMR Stats | |
---|---|
Position | chr1:147800951-147801200 (View on UCSC) |
Width | 250bp |
Genomic Context | promoter |
Nearest Genes | NBPF8, BC041003, TRNA_Gln (0bp away) |
ANODEV p-value | 0.0169813370801 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
452 | NBPF8 | 1538 | uc001eqe.3 | chr1 | 147574323 | 148346791 | - | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0), I13 (0), E14 (0) | 0.0 |
452 | NBPF8 | 1538 | uc001eqf.4 | chr1 | 147574323 | 148346929 | - | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (100), E19 (0), I19 (0), E20 (0) | 0.0 |
452 | NBPF8 | 1538 | uc001eqg.3 | chr1 | 147574323 | 148346929 | - | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0) | 0.0 |
452 | BC041003 | 1548 | uc001eqk.1 | chr1 | 147801124 | 147816764 | + | 77 | 30.8 | 1.42 | 1 | 100.0 | E1 (30.8), I1 (0), E2 (0), I2 (0), E3 (0) | 0.0 |
452 | TRNA_Gln | 1547 | uc021ovv.1 | chr1 | 147800937 | 147801008 | + | 58 | 23.2 | 0.83 | 1 | 100.0 | E1 (23.2) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
452 | chr1 | 147801084 | 147801370 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:678, expCount:6, expNums:277,343,378,426,462,477, expScores:678,228,236,400,378,362, srow:241509 |
452 | chr1 | 147800937 | 147801011 | phastConsElements100way | lod=69 | score:413, srow:518739 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
452 | cellmeth_recounts | PrEC: 33, LNCaP: 19, DU145: 27 | |
452 | cellmeth_diffreps_PrECvsLNCaP | A=50, B=15, Length=380, Event=Down, log2FC=-1.74, padj=0.000357255589059874 | |
452 | cellmeth_diffreps_PrECvsDU145 | A=50, B=19, Length=280, Event=Down, log2FC=-1.4, padj=0.00478684666058203 | |
452 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=13.1, Length=200, Event=Up, log2FC=Inf, padj=0.00251303816158297 | |
452 | cellexp | id=ENSG00000224481, name=RP11-495P10.3, PrEC=0, str=2, LNCaP=9, str=5, DU145=3, str=3 | |
452 | tcgameth | site:cg03951833, B=0.48, L=0.73, H=0.67 | |
452 | tcgameth | site:cg10207181, B=0.52, L=0.69, H=0.67 | |
452 | tcgaexp | gene=NBPF9, entrez=400818, pos=chr1:144146811-148346929(-), B=433, L=627, M=621, H=693 | |
452 | tcgaexp | gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0 | |
452 | tcgaexp | gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250 | |
452 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |