DMR 458 chr1:149155801-149155950 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:149155801-149155950 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | TRNA_His (0bp away) |
| ANODEV p-value | 0.0164024400139 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 458 | TRNA_His | 1569 | uc021oxe.1 | chr1 | 149155828 | 149155899 | - | 72 | 48.0 | 0.93 | 1 | 100.0 | E1 (48) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 458 | chr1 | 149155746 | 149156015 | wgEncodeRegDnaseClusteredV2 | 2 | score:239, srow:69080 |
| 458 | chr1 | 149155605 | 149156028 | wgEncodeRegTfbsClusteredV3 | RPC155 | score:156, expCount:1, expNums:531, expScores:156, srow:242114 |
| 458 | chr1 | 149155834 | 149155906 | phastConsElements100way | lod=67 | score:410, srow:520217 |
| 458 | chr1 | 149154107 | 149156106 | cpgShore | — | values(x.gr)[overs$srow, ]:2968 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 458 | cellmeth_recounts | PrEC: 1, LNCaP: 21, DU145: 37 |  |
| 458 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00296620769710024 |  |
| 458 | cellmeth_diffreps_PrECvsDU145 | A=2, B=136, Length=1500, Event=Up, log2FC=6.09, padj=0 |  |
| 458 | tcgaexp | gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0 |  |
| 458 | tcgaexp | gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250 |  |
| 458 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |