DMR 46 chr1:3696651-3697050 (400bp)

DMR Stats
Positionchr1:3696651-3697050 (View on UCSC)
Width400bp
Genomic Context3' end
Nearest GenesLRRC47 (0bp away)
ANODEV p-value0.00418422147223
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
46 LRRC47 128 uc001akx.1 chr1 3696784 3713068 - 267 66.75 1.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (66.75) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
46 chr1 3696266 3696770 wgEncodeRegDnaseClusteredV2 5 score:297, srow:2980
46 chr1 3693507 3697419 wgEncodeRegTfbsClusteredV3 POLR2A score:804, expCount:11, expNums:105,191,192,445,446,522,523,526,583,616,622, expScores:541,419,216,102,198,194,187,416,390,353,213, srow:10627
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
46 cellmeth_recounts PrEC: 290, LNCaP: 33, DU145: 22
46 cellmeth_diffreps_PrECvsLNCaP A=440, B=26, Length=740, Event=Down, log2FC=-4.08, padj=0
46 cellmeth_diffreps_PrECvsDU145 A=554, B=27, Length=1340, Event=Down, log2FC=-4.36, padj=0
46 cellexp id=ENSG00000130764, name=LRRC47, PrEC=4045, str=2998, LNCaP=4454, str=5124, DU145=1750, str=1898
46 tcgameth site:cg03256904, B=0.76, L=0.75, H=0.74
46 tcgameth site:cg25351920, B=0.89, L=0.89, H=0.87
46 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
46 tcgaexp gene=LRRC47, entrez=57470, pos=chr1:3696784-3713068(-), B=3945, L=4406, M=3958, H=3852
46 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305