DMR 462 chr1:150693001-150693200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:150693001-150693200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | HORMAD1 (0bp away) |
| ANODEV p-value | 0.00261358940251 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 462 | HORMAD1 | 1637 | uc001evk.2 | chr1 | 150670535 | 150693364 | - | 200 | 100.0 | 0.03 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 462 | HORMAD1 | 1637 | uc001evl.2 | chr1 | 150670535 | 150693364 | - | 200 | 100.0 | 0.26 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 462 | HORMAD1 | 1637 | uc001evm.2 | chr1 | 150670535 | 150693364 | - | 200 | 100.0 | 0.19 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 462 | chr1 | 150693026 | 150693510 | wgEncodeRegDnaseClusteredV2 | 5 | score:210, srow:69792 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 462 | cellmeth_recounts | PrEC: 5, LNCaP: 3, DU145: 24 |  |
| 462 | cellmeth_diffreps_PrECvsLNCaP | A=179, B=15, Length=520, Event=Down, log2FC=-3.58, padj=0 |  |
| 462 | cellmeth_diffreps_PrECvsDU145 | A=179, B=27, Length=460, Event=Down, log2FC=-2.73, padj=0 |  |
| 462 | cellmeth_diffreps_LNCaPvsDU145 | A=26.73, B=177.73, Length=980, Event=Up, log2FC=2.73, padj=0 |  |
| 462 | cellexp | id=ENSG00000143452, name=HORMAD1, PrEC=2, str=5, LNCaP=0, str=0, DU145=0, str=0 |  |
| 462 | tcgameth | site:cg20767356, B=0.98, L=0.98, H=0.98 |  |
| 462 | tcgaexp | gene=HORMAD1, entrez=84072, pos=chr1:150670535-150693364(-), B=1, L=0, M=0, H=1 |  |
| 462 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |