DMR 47415 chr1:2935401-2935550 (150bp)

DMR Stats
Positionchr1:2935401-2935550 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesACTRT2 (2495bp away)
ANODEV p-value0.0203133426817
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
47415 chr1 2935406 2935835 wgEncodeRegDnaseClusteredV2 3 score:213, srow:2078
47415 chr1 2934634 2936633 cpgShelf — values(x.gr)[overs$srow, ]:234
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
47415 cellmeth_recounts PrEC: 28, LNCaP: 1, DU145: 4
47415 cellmeth_diffreps_PrECvsLNCaP A=42, B=1, Length=420, Event=Down, log2FC=-5.39, padj=1.35311014715271e-10
47415 cellmeth_diffreps_PrECvsDU145 A=42, B=4, Length=400, Event=Down, log2FC=-3.39, padj=1.39916093410138e-07
47415 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
47415 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305