DMR 47416 chr1:2992351-2992800 (450bp)
| DMR Stats | |
|---|---|
| Position | chr1:2992351-2992800 (View on UCSC) |
| Width | 450bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00015374623331 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47416 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 450 | 100.0 | 3.62 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47416 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 450 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47416 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 450 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47416 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 450 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47416 | chr1 | 2992601 | 2992975 | wgEncodeRegDnaseClusteredV2 | 5 | score:417, srow:2137 |
| 47416 | chr1 | 2990719 | 2992718 | cpgShore | — | values(x.gr)[overs$srow, ]:383 |
| 47416 | chr1 | 2992719 | 2995272 | cpgShelf | — | values(x.gr)[overs$srow, ]:237 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47416 | cellmeth_recounts | PrEC: 194, LNCaP: 57, DU145: 8 |  |
| 47416 | cellmeth_diffreps_PrECvsLNCaP | A=407, B=95, Length=940, Event=Down, log2FC=-2.1, padj=0 |  |
| 47416 | cellmeth_diffreps_PrECvsDU145 | A=407, B=12, Length=980, Event=Down, log2FC=-5.08, padj=0 |  |
| 47416 | cellmeth_diffreps_LNCaPvsDU145 | A=73.76, B=5.61, Length=440, Event=Down, log2FC=-3.72, padj=0 |  |
| 47416 | cellmeth_diffreps_LNCaPvsDU145 | A=27.8, B=3.74, Length=320, Event=Down, log2FC=-2.89, padj=0.000816028517810598 |  |
| 47416 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47416 | tcgameth | site:cg14030836, B=0.57, L=0.46, H=0.51 |  |
| 47416 | tcgameth | site:cg16372810, B=0.82, L=0.71, H=0.7 |  |
| 47416 | tcgameth | site:cg25008795, B=0.9, L=0.85, H=0.83 |  |
| 47416 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47416 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47416 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |