DMR 47428 chr1:3167851-3168000 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3167851-3168000 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.0104504787946 |
| Frequencies | Benign: 4.0 (57.14%), Low: 6.0 (100.0%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47428 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47428 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47428 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.24 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47428 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47428 | chr1 | 3167726 | 3167915 | wgEncodeRegDnaseClusteredV2 | 7 | score:595, srow:2362 |
| 47428 | chr1 | 3167634 | 3167929 | wgEncodeRegTfbsClusteredV3 | HNF4A | score:390, expCount:2, expNums:182,432, expScores:390,251, srow:8806 |
| 47428 | chr1 | 3167656 | 3167995 | wgEncodeRegTfbsClusteredV3 | HDAC2 | score:258, expCount:1, expNums:181, expScores:258, srow:8807 |
| 47428 | chr1 | 3167673 | 3168008 | wgEncodeRegTfbsClusteredV3 | SP1 | score:289, expCount:1, expNums:196, expScores:289, srow:8808 |
| 47428 | chr1 | 3167678 | 3167977 | wgEncodeRegTfbsClusteredV3 | RXRA | score:338, expCount:1, expNums:194, expScores:338, srow:8809 |
| 47428 | chr1 | 3167689 | 3168004 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:96, expCount:1, expNums:445, expScores:96, srow:8810 |
| 47428 | chr1 | 3167690 | 3168059 | wgEncodeRegTfbsClusteredV3 | SREBP1 | score:551, expCount:1, expNums:451, expScores:551, srow:8811 |
| 47428 | chr1 | 3167692 | 3167967 | wgEncodeRegTfbsClusteredV3 | CEBPD | score:171, expCount:1, expNums:173, expScores:171, srow:8812 |
| 47428 | chr1 | 3167700 | 3167948 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:349, expCount:3, expNums:172,425,426, expScores:192,349,280, srow:8813 |
| 47428 | chr1 | 3167716 | 3167911 | wgEncodeRegTfbsClusteredV3 | EP300 | score:667, expCount:1, expNums:190, expScores:667, srow:8815 |
| 47428 | chr1 | 3167739 | 3167938 | wgEncodeRegTfbsClusteredV3 | USF1 | score:445, expCount:1, expNums:202, expScores:445, srow:8816 |
| 47428 | chr1 | 3167739 | 3167963 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:1000, expCount:2, expNums:171,423, expScores:332,1000, srow:8817 |
| 47428 | chr1 | 3166644 | 3168643 | cpgShelf | — | values(x.gr)[overs$srow, ]:255 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47428 | cellmeth_recounts | PrEC: 21, LNCaP: 0, DU145: 0 |  |
| 47428 | cellmeth_diffreps_PrECvsLNCaP | A=31, B=0, Length=420, Event=Down, log2FC=-Inf, padj=4.50368607357446e-09 |  |
| 47428 | cellmeth_diffreps_PrECvsDU145 | A=31, B=0, Length=420, Event=Down, log2FC=-Inf, padj=6.13838086470065e-09 |  |
| 47428 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47428 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47428 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47428 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |