DMR 47430 chr1:3182901-3183100 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:3182901-3183100 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.0341129501829 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47430 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47430 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47430 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47430 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 0.63 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47430 | chr1 | 3182921 | 3183215 | wgEncodeRegDnaseClusteredV2 | 3 | score:361, srow:2384 |
| 47430 | chr1 | 3182968 | 3182979 | tfbsConsSites | V$CREBP1_Q2 | score:848, zScore:1.83, srow:6249 |
| 47430 | chr1 | 3182987 | 3182996 | tfbsConsSites | V$LHX3_01 | score:933, zScore:2.25, srow:6250 |
| 47430 | chr1 | 3182911 | 3182915 | phastConsElements100way | lod=13 | score:247, srow:13663 |
| 47430 | chr1 | 3182963 | 3182963 | phastConsElements100way | lod=51 | score:383, srow:13664 |
| 47430 | chr1 | 3182973 | 3182982 | phastConsElements100way | lod=22 | score:300, srow:13665 |
| 47430 | chr1 | 3182822 | 3183216 | cpgIsland | CpG: 33 | length:395, cpgNum:33, gcNum:260, perCpg:16.7, perGc:65.8, obsExp:0.78, srow:252 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47430 | cellmeth_recounts | PrEC: 57, LNCaP: 0, DU145: 13 |  |
| 47430 | cellmeth_diffreps_PrECvsLNCaP | A=188, B=1, Length=1440, Event=Down, log2FC=-7.55, padj=0 |  |
| 47430 | cellmeth_diffreps_PrECvsDU145 | A=149, B=17, Length=1000, Event=Down, log2FC=-3.13, padj=0 |  |
| 47430 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=220, Event=Up, log2FC=Inf, padj=0.00708953135814864 |  |
| 47430 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47430 | tcgameth | site:cg06354193, B=0.61, L=0.57, H=0.59 |  |
| 47430 | tcgameth | site:cg19896590, B=0.97, L=0.97, H=0.9 |  |
| 47430 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47430 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47430 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |