DMR 47432 chr1:3193001-3193150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3193001-3193150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00107799207629 |
| Frequencies | Benign: 6.0 (85.71%), Low: 4.0 (66.67%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47432 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 2.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47432 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47432 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47432 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47432 | chr1 | 3192126 | 3193015 | wgEncodeRegDnaseClusteredV2 | 35 | score:1000, srow:2396 |
| 47432 | chr1 | 3193026 | 3193275 | wgEncodeRegDnaseClusteredV2 | 8 | score:464, srow:2397 |
| 47432 | chr1 | 3193086 | 3193101 | tfbsConsSites | V$ELK1_01 | score:857, zScore:2, srow:6337 |
| 47432 | chr1 | 3193092 | 3193101 | tfbsConsSites | V$CREL_01 | score:942, zScore:2.5, srow:6338 |
| 47432 | chr1 | 3193092 | 3193101 | tfbsConsSites | V$NFKAPPAB_01 | score:909, zScore:1.82, srow:6339 |
| 47432 | chr1 | 3191377 | 3193376 | cpgShelf | — | values(x.gr)[overs$srow, ]:258 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47432 | cellmeth_recounts | PrEC: 11, LNCaP: 0, DU145: 0 |  |
| 47432 | cellmeth_diffreps_PrECvsLNCaP | A=123, B=3, Length=1100, Event=Down, log2FC=-5.36, padj=0 |  |
| 47432 | cellmeth_diffreps_PrECvsDU145 | A=72, B=3, Length=580, Event=Down, log2FC=-4.58, padj=0 |  |
| 47432 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47432 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47432 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47432 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |