DMR 47433 chr1:3194251-3194400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3194251-3194400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00126428279501 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47433 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47433 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.56 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47433 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 16.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47433 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 48.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47433 | chr1 | 3194046 | 3194641 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:328, expCount:1, expNums:96, expScores:328, srow:8829 |
| 47433 | chr1 | 3194197 | 3194506 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:207, expCount:1, expNums:125, expScores:207, srow:8830 |
| 47433 | chr1 | 3194240 | 3194543 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:233, expCount:1, expNums:117, expScores:233, srow:8831 |
| 47433 | chr1 | 3194242 | 3194459 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:411, expCount:1, expNums:83, expScores:411, srow:8832 |
| 47433 | chr1 | 3194248 | 3194557 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:90, expCount:1, expNums:358, expScores:90, srow:8833 |
| 47433 | chr1 | 3194278 | 3194573 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:235, expCount:1, expNums:423, expScores:235, srow:8834 |
| 47433 | chr1 | 3193377 | 3195376 | cpgShore | — | values(x.gr)[overs$srow, ]:413 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47433 | cellmeth_recounts | PrEC: 94, LNCaP: 19, DU145: 10 |  |
| 47433 | cellmeth_diffreps_PrECvsLNCaP | A=189, B=15, Length=600, Event=Down, log2FC=-3.66, padj=0 |  |
| 47433 | cellmeth_diffreps_PrECvsDU145 | A=189, B=17, Length=580, Event=Down, log2FC=-3.47, padj=0 |  |
| 47433 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47433 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47433 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47433 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |