DMR 47434 chr1:3195251-3195600 (350bp)
| DMR Stats | |
|---|---|
| Position | chr1:3195251-3195600 (View on UCSC) |
| Width | 350bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00527566840345 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47434 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 72.94 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47434 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 2.95 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47434 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 2.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47434 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 3.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47434 | chr1 | 3195046 | 3195295 | wgEncodeRegDnaseClusteredV2 | 6 | score:356, srow:2401 |
| 47434 | chr1 | 3195306 | 3195555 | wgEncodeRegDnaseClusteredV2 | 4 | score:324, srow:2402 |
| 47434 | chr1 | 3195377 | 3196052 | cpgIsland | CpG: 47 | length:676, cpgNum:47, gcNum:455, perCpg:13.9, perGc:67.3, obsExp:0.61, srow:254 |
| 47434 | chr1 | 3193377 | 3195376 | cpgShore | — | values(x.gr)[overs$srow, ]:413 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47434 | cellmeth_recounts | PrEC: 162, LNCaP: 1, DU145: 4 |  |
| 47434 | cellmeth_diffreps_PrECvsLNCaP | A=358, B=1, Length=1060, Event=Down, log2FC=-8.48, padj=0 |  |
| 47434 | cellmeth_diffreps_PrECvsDU145 | A=358, B=13, Length=1020, Event=Down, log2FC=-4.78, padj=0 |  |
| 47434 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47434 | tcgameth | site:cg09032732, B=0.84, L=0.69, H=0.67 |  |
| 47434 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47434 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47434 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |