DMR 47436 chr1:3301701-3301850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3301701-3301850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00191211719624 |
| Frequencies | Benign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47436 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.8 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (10), E4 (90), I4 (0.67), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47436 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (10), E4 (90), I4 (0.67), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47436 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.96 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (10), E4 (90), I4 (0.67), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47436 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (10), E4 (90), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47436 | chr1 | 3301749 | 3301749 | cosmic | COSM1581519 | srow:2109 |
| 47436 | chr1 | 3301758 | 3301758 | cosmic | COSM39575 | srow:2110 |
| 47436 | chr1 | 3301759 | 3301759 | cosmic | COSM1341843 | srow:2111 |
| 47436 | chr1 | 3301765 | 3301765 | cosmic | COSM908313 | srow:2112 |
| 47436 | chr1 | 3301794 | 3301794 | cosmic | COSM1287366 | srow:2113 |
| 47436 | chr1 | 3301795 | 3301795 | cosmic | COSM249343 | srow:2114 |
| 47436 | chr1 | 3301801 | 3301801 | cosmic | COSM908314 | srow:2115 |
| 47436 | chr1 | 3301820 | 3301820 | cosmic | COSM356406 | srow:2116 |
| 47436 | chr1 | 3301830 | 3301830 | cosmic | COSM1581520 | srow:2117 |
| 47436 | chr1 | 3301713 | 3301720 | phastConsElements100way | lod=59 | score:397, srow:14120 |
| 47436 | chr1 | 3301722 | 3301732 | phastConsElements100way | lod=79 | score:426, srow:14121 |
| 47436 | chr1 | 3301737 | 3301747 | phastConsElements100way | lod=109 | score:458, srow:14122 |
| 47436 | chr1 | 3301749 | 3301753 | phastConsElements100way | lod=41 | score:361, srow:14123 |
| 47436 | chr1 | 3301761 | 3301765 | phastConsElements100way | lod=25 | score:312, srow:14124 |
| 47436 | chr1 | 3301767 | 3301771 | phastConsElements100way | lod=32 | score:337, srow:14125 |
| 47436 | chr1 | 3301773 | 3301795 | phastConsElements100way | lod=242 | score:537, srow:14126 |
| 47436 | chr1 | 3301797 | 3301801 | phastConsElements100way | lod=35 | score:345, srow:14127 |
| 47436 | chr1 | 3301803 | 3301810 | phastConsElements100way | lod=47 | score:375, srow:14128 |
| 47436 | chr1 | 3301812 | 3301813 | phastConsElements100way | lod=19 | score:285, srow:14129 |
| 47436 | chr1 | 3301815 | 3301838 | phastConsElements100way | lod=149 | score:489, srow:14130 |
| 47436 | chr1 | 3301840 | 3301856 | phastConsElements100way | lod=141 | score:483, srow:14131 |
- 21 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47436 | cellmeth_recounts | PrEC: 14, LNCaP: 0, DU145: 0 |  |
| 47436 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=0, Length=380, Event=Down, log2FC=-Inf, padj=4.02459409075954e-06 |  |
| 47436 | cellmeth_diffreps_PrECvsDU145 | A=21, B=0, Length=380, Event=Down, log2FC=-Inf, padj=5.26387855513023e-06 |  |
| 47436 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47436 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47436 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47436 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |