DMR 47437 chr1:3321151-3321500 (350bp)
| DMR Stats | |
|---|---|
| Position | chr1:3321151-3321500 (View on UCSC) |
| Width | 350bp |
| Genomic Context | exon |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00625085348259 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47437 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (43.43), E7 (42.29), I7 (14.57), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47437 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 0.71 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (43.43), E7 (42.29), I7 (14.57), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47437 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 0.83 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (43.43), E7 (42.29), I7 (14.57), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 47437 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 350 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (43.43), E7 (42.29), I7 (14.57), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47437 | chr1 | 3321166 | 3321815 | wgEncodeRegDnaseClusteredV2 | 5 | score:494, srow:2551 |
| 47437 | chr1 | 3321251 | 3321846 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:251, expCount:1, expNums:368, expScores:251, srow:9138 |
| 47437 | chr1 | 3321326 | 3321769 | wgEncodeRegTfbsClusteredV3 | UBTF | score:165, expCount:2, expNums:548,549, expScores:136,165, srow:9139 |
| 47437 | chr1 | 3321339 | 3321339 | cosmic | COSM534912 | srow:2132 |
| 47437 | chr1 | 3321357 | 3321357 | cosmic | COSM350037 | srow:2133 |
| 47437 | chr1 | 3321362 | 3321362 | cosmic | COSM138173 | srow:2134 |
| 47437 | chr1 | 3321392 | 3321392 | cosmic | COSM1602221 | srow:2135 |
| 47437 | chr1 | 3321424 | 3321424 | cosmic | COSM1341863 | srow:2136 |
| 47437 | chr1 | 3321430 | 3321430 | cosmic | COSM1341864 | srow:2137 |
| 47437 | chr1 | 3321253 | 3321255 | phastConsElements100way | lod=13 | score:247, srow:14212 |
| 47437 | chr1 | 3321282 | 3321284 | phastConsElements100way | lod=18 | score:280, srow:14213 |
| 47437 | chr1 | 3321300 | 3321320 | phastConsElements100way | lod=234 | score:534, srow:14214 |
| 47437 | chr1 | 3321322 | 3321329 | phastConsElements100way | lod=74 | score:420, srow:14215 |
| 47437 | chr1 | 3321331 | 3321338 | phastConsElements100way | lod=118 | score:466, srow:14216 |
| 47437 | chr1 | 3321340 | 3321359 | phastConsElements100way | lod=288 | score:554, srow:14217 |
| 47437 | chr1 | 3321361 | 3321392 | phastConsElements100way | lod=424 | score:592, srow:14218 |
| 47437 | chr1 | 3321394 | 3321416 | phastConsElements100way | lod=295 | score:556, srow:14219 |
| 47437 | chr1 | 3321418 | 3321454 | phastConsElements100way | lod=447 | score:598, srow:14220 |
| 47437 | chr1 | 3321270 | 3322310 | cpgIsland | CpG: 75 | length:1041, cpgNum:75, gcNum:691, perCpg:14.4, perGc:66.4, obsExp:0.66, srow:260 |
| 47437 | chr1 | 3319270 | 3321269 | cpgShore | — | values(x.gr)[overs$srow, ]:424 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47437 | cellmeth_recounts | PrEC: 253, LNCaP: 28, DU145: 23 |  |
| 47437 | cellmeth_diffreps_PrECvsLNCaP | A=730, B=42, Length=2500, Event=Down, log2FC=-4.12, padj=0 |  |
| 47437 | cellmeth_diffreps_PrECvsDU145 | A=581, B=40, Length=1560, Event=Down, log2FC=-3.86, padj=0 |  |
| 47437 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 47437 | tcgameth | site:cg05520109, B=0.92, L=0.87, H=0.83 |  |
| 47437 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47437 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 47437 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |