DMR 49 chr1:3824651-3824950 (300bp)

DMR Stats
Positionchr1:3824651-3824950 (View on UCSC)
Width300bp
Genomic Contextintron
Nearest GenesLOC100133612 (0bp away)
ANODEV p-value0.020562961948
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
49 LOC100133612 132 uc001alg.3 chr1 3816968 3832011 + 300 100.0 1.65 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
49 LOC100133612 132 uc001alh.4 chr1 3816968 3833879 + 300 100.0 2.24 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
49 LOC100133612 132 uc010nzo.2 chr1 3816968 3832011 + 300 100.0 1.65 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
49 chr1 3824446 3824730 wgEncodeRegDnaseClusteredV2 6 score:323, srow:3097
49 chr1 3824411 3824686 wgEncodeRegTfbsClusteredV3 CEBPB score:172, expCount:1, expNums:477, expScores:172, srow:11117
49 chr1 3824463 3824786 wgEncodeRegTfbsClusteredV3 E2F6 score:162, expCount:1, expNums:215, expScores:162, srow:11118
49 chr1 3824474 3824857 wgEncodeRegTfbsClusteredV3 MYC score:296, expCount:1, expNums:487, expScores:296, srow:11119
49 chr1 3824475 3824714 wgEncodeRegTfbsClusteredV3 CTCF score:153, expCount:1, expNums:493, expScores:153, srow:11120
49 chr1 3824497 3824852 wgEncodeRegTfbsClusteredV3 MAX score:749, expCount:3, expNums:223,511,576, expScores:749,294,211, srow:11121
49 chr1 3824560 3824823 wgEncodeRegTfbsClusteredV3 USF1 score:208, expCount:1, expNums:243, expScores:208, srow:11122
49 chr1 3824629 3824740 wgEncodeRegTfbsClusteredV3 EGR1 score:471, expCount:1, expNums:216, expScores:471, srow:11123
49 chr1 3824719 3824728 tfbsConsSites V$GATA1_05 score:897, zScore:2.1, srow:7279
49 chr1 3824769 3824783 tfbsConsSites V$STAT5A_01 score:870, zScore:1.92, srow:7280
49 chr1 3824769 3824783 tfbsConsSites V$STAT5B_01 score:874, zScore:2.23, srow:7281
49 chr1 3824765 3824778 phastConsElements100way lod=28 score:323, srow:16985
49 chr1 3824457 3826456 cpgShore — values(x.gr)[overs$srow, ]:490
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
49 cellmeth_recounts PrEC: 1, LNCaP: 0, DU145: 4
49 cellexp id=ENSG00000236423, name=LINC01134, PrEC=8, str=53, LNCaP=43, str=35, DU145=30, str=13
49 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
49 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305
49 tcgaexp gene=LOC100133612, entrez=100133612, pos=chr1:3816968-3833879(+), B=16, L=33, M=32, H=34