DMR 495 chr1:161929351-161929550 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:161929351-161929550 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | ATF6 (0bp away) |
| ANODEV p-value | 0.00216984999106 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 495 | ATF6 | 2048 | uc001gbs.3 | chr1 | 161736034 | 161933860 | + | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (100) | 0.0 |
- 1 genes
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 495 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 15 |  |
| 495 | cellmeth_diffreps_PrECvsDU145 | A=0, B=12, Length=260, Event=Up, log2FC=Inf, padj=0.00174045876043459 |  |
| 495 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=260, Event=Up, log2FC=Inf, padj=0.00708953135814864 |  |
| 495 | cellexp | id=ENSG00000118217, name=ATF6, PrEC=4903, str=10367, LNCaP=3572, str=3579, DU145=2767, str=3580 |  |
| 495 | tcgaexp | gene=ATF6, entrez=22926, pos=chr1:161736034-161933860(+), B=3953, L=3256, M=3434, H=3610 |  |
| 495 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |